Gene info for HMPREF1078_RS03460 in Parabacteroides merdae CL09T00C40

Annotation: BamA/TamA family outer membrane protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976524, + strand, nucleotides 815,660 to 816,934
See nucleotide sequence around HMPREF1078_RS03460 or for all of scaffold NZ_JH976524

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS19495 and HMPREF1078_RS19730 are separated by 9 nucleotidesHMPREF1078_RS19730 and HMPREF1078_RS19735 overlap by 62 nucleotidesHMPREF1078_RS19735 and HMPREF1078_RS03450 are separated by 134 nucleotidesHMPREF1078_RS03450 and HMPREF1078_RS03455 are separated by 419 nucleotidesHMPREF1078_RS03455 and HMPREF1078_RS03460 are separated by 275 nucleotidesHMPREF1078_RS03460 and HMPREF1078_RS03465 are separated by 106 nucleotidesHMPREF1078_RS03465 and HMPREF1078_RS03470 are separated by 436 nucleotidesHMPREF1078_RS03470 and HMPREF1078_RS03475 overlap by 4 nucleotidesHMPREF1078_RS03475 and HMPREF1078_RS03480 overlap by 10 nucleotidesHMPREF1078_RS03480 and HMPREF1078_RS03485 are separated by 21 nucleotides HMPREF1078_RS19495: HMPREF1078_RS19495 - hydrogenase formation protein HypD, at 813,145 to 813,327 _RS19495 HMPREF1078_RS19730: HMPREF1078_RS19730 - hypothetical protein, at 813,337 to 813,573 _RS19730 HMPREF1078_RS19735: HMPREF1078_RS19735 - AIR synthase-related protein, at 813,512 to 813,793 _RS19735 HMPREF1078_RS03450: HMPREF1078_RS03450 - thioredoxin-like domain-containing protein, at 813,928 to 814,428 _RS03450 HMPREF1078_RS03455: HMPREF1078_RS03455 - hypothetical protein, at 814,848 to 815,384 _RS03455 HMPREF1078_RS03460: HMPREF1078_RS03460 - BamA/TamA family outer membrane protein, at 815,660 to 816,934 _RS03460 HMPREF1078_RS03465: HMPREF1078_RS03465 - DUF5686 and carboxypeptidase-like regulatory domain-containing protein, at 817,041 to 819,596 _RS03465 HMPREF1078_RS03470: HMPREF1078_RS03470 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 820,033 to 820,872 _RS03470 HMPREF1078_RS03475: HMPREF1078_RS03475 - thiamine phosphate synthase, at 820,869 to 821,468 _RS03475 HMPREF1078_RS03480: HMPREF1078_RS03480 - thiamine phosphate synthase, at 821,459 to 822,196 _RS03480 HMPREF1078_RS03485: HMPREF1078_RS03485 - phosphomethylpyrimidine synthase ThiC, at 822,218 to 823,924 _RS03485
Locus Name Description Strand Phenotype
HMPREF1078_RS19495 HMPREF1078_RS19495 hydrogenase formation protein HypD + no data
HMPREF1078_RS19730 HMPREF1078_RS19730 hypothetical protein + insig.
HMPREF1078_RS19735 HMPREF1078_RS19735 AIR synthase-related protein + insig.
HMPREF1078_RS03450 HMPREF1078_RS03450 thioredoxin-like domain-containing protein - insig.
HMPREF1078_RS03455 HMPREF1078_RS03455 hypothetical protein - insig.
HMPREF1078_RS03460 HMPREF1078_RS03460 BamA/TamA family outer membrane protein + cofit
HMPREF1078_RS03465 HMPREF1078_RS03465 DUF5686 and carboxypeptidase-like regulatory domain-containing protein - insig.
HMPREF1078_RS03470 HMPREF1078_RS03470 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase + insig.
HMPREF1078_RS03475 HMPREF1078_RS03475 thiamine phosphate synthase + strong
HMPREF1078_RS03480 HMPREF1078_RS03480 thiamine phosphate synthase + insig.
HMPREF1078_RS03485 HMPREF1078_RS03485 phosphomethylpyrimidine synthase ThiC + strong

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