Gene info for HMPREF1078_RS02575 in Parabacteroides merdae CL09T00C40

Annotation: RagB/SusD family nutrient uptake outer membrane protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976524, - strand, nucleotides 639,444 to 641,207
See nucleotide sequence around HMPREF1078_RS02575 or for all of scaffold NZ_JH976524

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS02550 and HMPREF1078_RS02555 are separated by 14 nucleotidesHMPREF1078_RS02555 and HMPREF1078_RS02560 overlap by 4 nucleotidesHMPREF1078_RS02560 and HMPREF1078_RS02565 are separated by 134 nucleotidesHMPREF1078_RS02565 and HMPREF1078_RS02570 overlap by 4 nucleotidesHMPREF1078_RS02570 and HMPREF1078_RS02575 are separated by 762 nucleotidesHMPREF1078_RS02575 and HMPREF1078_RS02580 are separated by 22 nucleotidesHMPREF1078_RS02580 and HMPREF1078_RS02585 are separated by 366 nucleotidesHMPREF1078_RS02585 and HMPREF1078_RS02590 overlap by 35 nucleotidesHMPREF1078_RS02590 and HMPREF1078_RS02600 are separated by 1194 nucleotidesHMPREF1078_RS02600 and HMPREF1078_RS02605 are separated by 25 nucleotides HMPREF1078_RS02550: HMPREF1078_RS02550 - protein phosphatase 2C domain-containing protein, at 635,935 to 636,738 _RS02550 HMPREF1078_RS02555: HMPREF1078_RS02555 - FHA domain-containing protein, at 636,753 to 637,268 _RS02555 HMPREF1078_RS02560: HMPREF1078_RS02560 - hypothetical protein, at 637,265 to 637,504 _RS02560 HMPREF1078_RS02565: HMPREF1078_RS02565 - FHA domain-containing protein, at 637,639 to 638,292 _RS02565 HMPREF1078_RS02570: HMPREF1078_RS02570 - LytTR family DNA-binding domain-containing protein, at 638,289 to 638,681 _RS02570 HMPREF1078_RS02575: HMPREF1078_RS02575 - RagB/SusD family nutrient uptake outer membrane protein, at 639,444 to 641,207 _RS02575 HMPREF1078_RS02580: HMPREF1078_RS02580 - TonB-dependent receptor, at 641,230 to 644,577 _RS02580 HMPREF1078_RS02585: HMPREF1078_RS02585 - type II toxin-antitoxin system RelE/ParE family toxin, at 644,944 to 645,291 _RS02585 HMPREF1078_RS02590: HMPREF1078_RS02590 - helix-turn-helix transcriptional regulator, at 645,257 to 645,562 _RS02590 HMPREF1078_RS02600: HMPREF1078_RS02600 - Helicase associated domain protein, at 646,757 to 649,018 _RS02600 HMPREF1078_RS02605: HMPREF1078_RS02605 - Arm DNA-binding domain-containing protein, at 649,044 to 649,352 _RS02605
Locus Name Description Strand Phenotype
HMPREF1078_RS02550 HMPREF1078_RS02550 protein phosphatase 2C domain-containing protein - strong
HMPREF1078_RS02555 HMPREF1078_RS02555 FHA domain-containing protein - strong
HMPREF1078_RS02560 HMPREF1078_RS02560 hypothetical protein - strong
HMPREF1078_RS02565 HMPREF1078_RS02565 FHA domain-containing protein - strong
HMPREF1078_RS02570 HMPREF1078_RS02570 LytTR family DNA-binding domain-containing protein - strong
HMPREF1078_RS02575 HMPREF1078_RS02575 RagB/SusD family nutrient uptake outer membrane protein - insig.
HMPREF1078_RS02580 HMPREF1078_RS02580 TonB-dependent receptor - insig.
HMPREF1078_RS02585 HMPREF1078_RS02585 type II toxin-antitoxin system RelE/ParE family toxin + insig.
HMPREF1078_RS02590 HMPREF1078_RS02590 helix-turn-helix transcriptional regulator + no data
HMPREF1078_RS02600 HMPREF1078_RS02600 Helicase associated domain protein - insig.
HMPREF1078_RS02605 HMPREF1078_RS02605 Arm DNA-binding domain-containing protein - insig.

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