Gene info for HMPREF1078_RS01110 in Parabacteroides merdae CL09T00C40

Annotation: DNA topoisomerase 3
Type 1: Protein-coding gene
Located on scaffold NZ_JH976524, - strand, nucleotides 278,524 to 280,602
See nucleotide sequence around HMPREF1078_RS01110 or for all of scaffold NZ_JH976524

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS01085 and HMPREF1078_RS01090 overlap by 1 nucleotidesHMPREF1078_RS01090 and HMPREF1078_RS01095 are separated by 98 nucleotidesHMPREF1078_RS01095 and HMPREF1078_RS01100 are separated by 299 nucleotidesHMPREF1078_RS01100 and HMPREF1078_RS01105 are separated by 20 nucleotidesHMPREF1078_RS01105 and HMPREF1078_RS01110 are separated by 114 nucleotidesHMPREF1078_RS01110 and HMPREF1078_RS01115 are separated by 131 nucleotidesHMPREF1078_RS01115 and HMPREF1078_RS01120 are separated by 127 nucleotidesHMPREF1078_RS01120 and HMPREF1078_RS01125 are separated by 102 nucleotidesHMPREF1078_RS01125 and HMPREF1078_RS01130 are separated by 87 nucleotidesHMPREF1078_RS01130 and HMPREF1078_RS01135 overlap by 26 nucleotides HMPREF1078_RS01085: HMPREF1078_RS01085 - 4Fe-4S dicluster domain-containing protein, at 273,008 to 274,597 _RS01085 HMPREF1078_RS01090: HMPREF1078_RS01090 - DUF362 domain-containing protein, at 274,597 to 275,529 _RS01090 HMPREF1078_RS01095: HMPREF1078_RS01095 - hypothetical protein, at 275,628 to 276,422 _RS01095 HMPREF1078_RS01100: HMPREF1078_RS01100 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 276,722 to 277,897 _RS01100 HMPREF1078_RS01105: HMPREF1078_RS01105 - NUDIX domain-containing protein, at 277,918 to 278,409 _RS01105 HMPREF1078_RS01110: HMPREF1078_RS01110 - DNA topoisomerase 3, at 278,524 to 280,602 _RS01110 HMPREF1078_RS01115: HMPREF1078_RS01115 - DUF4833 domain-containing protein, at 280,734 to 281,282 _RS01115 HMPREF1078_RS01120: HMPREF1078_RS01120 - prephenate dehydrogenase/arogenate dehydrogenase family protein, at 281,410 to 282,183 _RS01120 HMPREF1078_RS01125: HMPREF1078_RS01125 - bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II, at 282,286 to 283,356 _RS01125 HMPREF1078_RS01130: HMPREF1078_RS01130 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 283,444 to 284,631 _RS01130 HMPREF1078_RS01135: HMPREF1078_RS01135 - prephenate dehydratase, at 284,606 to 285,451 _RS01135
Locus Name Description Strand Phenotype
HMPREF1078_RS01085 HMPREF1078_RS01085 4Fe-4S dicluster domain-containing protein - sig.
HMPREF1078_RS01090 HMPREF1078_RS01090 DUF362 domain-containing protein - insig.
HMPREF1078_RS01095 HMPREF1078_RS01095 hypothetical protein + insig.
HMPREF1078_RS01100 HMPREF1078_RS01100 phosphoribosylaminoimidazolecarboxamide formyltransferase - insig.
HMPREF1078_RS01105 HMPREF1078_RS01105 NUDIX domain-containing protein - insig.
HMPREF1078_RS01110 HMPREF1078_RS01110 DNA topoisomerase 3 - cofit
HMPREF1078_RS01115 HMPREF1078_RS01115 DUF4833 domain-containing protein - insig.
HMPREF1078_RS01120 HMPREF1078_RS01120 prephenate dehydrogenase/arogenate dehydrogenase family protein - strong
HMPREF1078_RS01125 HMPREF1078_RS01125 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II - strong
HMPREF1078_RS01130 HMPREF1078_RS01130 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme - strong
HMPREF1078_RS01135 HMPREF1078_RS01135 prephenate dehydratase - strong

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