Gene info for HMPREF1078_RS01060 in Parabacteroides merdae CL09T00C40

Annotation: efflux RND transporter permease subunit
Type 1: Protein-coding gene
Located on scaffold NZ_JH976524, + strand, nucleotides 264,116 to 267,244
See nucleotide sequence around HMPREF1078_RS01060 or for all of scaffold NZ_JH976524

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS01035 and HMPREF1078_RS01040 are separated by 12 nucleotidesHMPREF1078_RS01040 and HMPREF1078_RS01045 are separated by 37 nucleotidesHMPREF1078_RS01045 and HMPREF1078_RS01050 are separated by 163 nucleotidesHMPREF1078_RS01050 and HMPREF1078_RS01055 are separated by 351 nucleotidesHMPREF1078_RS01055 and HMPREF1078_RS01060 overlap by 1 nucleotidesHMPREF1078_RS01060 and HMPREF1078_RS01065 overlap by 1 nucleotidesHMPREF1078_RS01065 and HMPREF1078_RS01070 are separated by 159 nucleotidesHMPREF1078_RS01070 and HMPREF1078_RS01075 are separated by 903 nucleotidesHMPREF1078_RS01075 and HMPREF1078_RS01080 are separated by 12 nucleotidesHMPREF1078_RS01080 and HMPREF1078_RS01085 are separated by 73 nucleotides HMPREF1078_RS01035: HMPREF1078_RS01035 - o-succinylbenzoate synthase, at 255,079 to 256,128 _RS01035 HMPREF1078_RS01040: HMPREF1078_RS01040 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 256,141 to 256,965 _RS01040 HMPREF1078_RS01045: HMPREF1078_RS01045 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 257,003 to 258,667 _RS01045 HMPREF1078_RS01050: HMPREF1078_RS01050 - glycoside hydrolase family 31 protein, at 258,831 to 262,697 _RS01050 HMPREF1078_RS01055: HMPREF1078_RS01055 - efflux RND transporter periplasmic adaptor subunit, at 263,049 to 264,116 _RS01055 HMPREF1078_RS01060: HMPREF1078_RS01060 - efflux RND transporter permease subunit, at 264,116 to 267,244 _RS01060 HMPREF1078_RS01065: HMPREF1078_RS01065 - TolC family protein, at 267,244 to 268,611 _RS01065 HMPREF1078_RS01070: HMPREF1078_RS01070 - DUF4925 domain-containing protein, at 268,771 to 269,802 _RS01070 HMPREF1078_RS01075: HMPREF1078_RS01075 - LptF/LptG family permease, at 270,706 to 271,791 _RS01075 HMPREF1078_RS01080: HMPREF1078_RS01080 - tRNA guanosine(34) transglycosylase Tgt, at 271,804 to 272,934 _RS01080 HMPREF1078_RS01085: HMPREF1078_RS01085 - 4Fe-4S dicluster domain-containing protein, at 273,008 to 274,597 _RS01085
Locus Name Description Strand Phenotype
HMPREF1078_RS01035 HMPREF1078_RS01035 o-succinylbenzoate synthase - insig.
HMPREF1078_RS01040 HMPREF1078_RS01040 1,4-dihydroxy-2-naphthoyl-CoA synthase - insig.
HMPREF1078_RS01045 HMPREF1078_RS01045 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase - cofit
HMPREF1078_RS01050 HMPREF1078_RS01050 glycoside hydrolase family 31 protein - insig.
HMPREF1078_RS01055 HMPREF1078_RS01055 efflux RND transporter periplasmic adaptor subunit + insig.
HMPREF1078_RS01060 HMPREF1078_RS01060 efflux RND transporter permease subunit + insig.
HMPREF1078_RS01065 HMPREF1078_RS01065 TolC family protein + insig.
HMPREF1078_RS01070 HMPREF1078_RS01070 DUF4925 domain-containing protein + sig.
HMPREF1078_RS01075 HMPREF1078_RS01075 LptF/LptG family permease - no data
HMPREF1078_RS01080 HMPREF1078_RS01080 tRNA guanosine(34) transglycosylase Tgt - sig.
HMPREF1078_RS01085 HMPREF1078_RS01085 4Fe-4S dicluster domain-containing protein - sig.

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