Gene info for HMPREF1078_RS00900 in Parabacteroides merdae CL09T00C40

Annotation: efflux RND transporter permease subunit
Type 1: Protein-coding gene
Located on scaffold NZ_JH976524, + strand, nucleotides 217,495 to 220,611
See nucleotide sequence around HMPREF1078_RS00900 or for all of scaffold NZ_JH976524

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS00875 and HMPREF1078_RS00880 are separated by 42 nucleotidesHMPREF1078_RS00880 and HMPREF1078_RS00885 are separated by 173 nucleotidesHMPREF1078_RS00885 and HMPREF1078_RS00890 are separated by 596 nucleotidesHMPREF1078_RS00890 and HMPREF1078_RS00895 are separated by 93 nucleotidesHMPREF1078_RS00895 and HMPREF1078_RS00900 are separated by 23 nucleotidesHMPREF1078_RS00900 and HMPREF1078_RS00905 overlap by 4 nucleotidesHMPREF1078_RS00905 and HMPREF1078_RS00910 are separated by 169 nucleotidesHMPREF1078_RS00910 and HMPREF1078_RS00915 are separated by 3 nucleotidesHMPREF1078_RS00915 and HMPREF1078_RS00925 are separated by 481 nucleotidesHMPREF1078_RS00925 and HMPREF1078_RS00930 are separated by 10 nucleotides HMPREF1078_RS00875: HMPREF1078_RS00875 - MATE family efflux transporter, at 212,179 to 213,525 _RS00875 HMPREF1078_RS00880: HMPREF1078_RS00880 - cytidylate kinase-like family protein, at 213,568 to 214,209 _RS00880 HMPREF1078_RS00885: HMPREF1078_RS00885 - sulfide-dependent adenosine diphosphate thiazole synthase, at 214,383 to 215,153 _RS00885 HMPREF1078_RS00890: HMPREF1078_RS00890 - hypothetical protein, at 215,750 to 216,160 _RS00890 HMPREF1078_RS00895: HMPREF1078_RS00895 - efflux RND transporter periplasmic adaptor subunit, at 216,254 to 217,471 _RS00895 HMPREF1078_RS00900: HMPREF1078_RS00900 - efflux RND transporter permease subunit, at 217,495 to 220,611 _RS00900 HMPREF1078_RS00905: HMPREF1078_RS00905 - TolC family protein, at 220,608 to 221,789 _RS00905 HMPREF1078_RS00910: HMPREF1078_RS00910 - GH92 family glycosyl hydrolase, at 221,959 to 224,268 _RS00910 HMPREF1078_RS00915: HMPREF1078_RS00915 - GH92 family glycosyl hydrolase, at 224,272 to 226,572 _RS00915 HMPREF1078_RS00925: HMPREF1078_RS00925 - UpxY family transcription antiterminator, at 227,054 to 227,566 _RS00925 HMPREF1078_RS00930: HMPREF1078_RS00930 - cobyric acid synthase, at 227,577 to 229,100 _RS00930
Locus Name Description Strand Phenotype
HMPREF1078_RS00875 HMPREF1078_RS00875 MATE family efflux transporter + insig.
HMPREF1078_RS00880 HMPREF1078_RS00880 cytidylate kinase-like family protein + insig.
HMPREF1078_RS00885 HMPREF1078_RS00885 sulfide-dependent adenosine diphosphate thiazole synthase + insig.
HMPREF1078_RS00890 HMPREF1078_RS00890 hypothetical protein + insig.
HMPREF1078_RS00895 HMPREF1078_RS00895 efflux RND transporter periplasmic adaptor subunit + insig.
HMPREF1078_RS00900 HMPREF1078_RS00900 efflux RND transporter permease subunit + insig.
HMPREF1078_RS00905 HMPREF1078_RS00905 TolC family protein + insig.
HMPREF1078_RS00910 HMPREF1078_RS00910 GH92 family glycosyl hydrolase + cofit
HMPREF1078_RS00915 HMPREF1078_RS00915 GH92 family glycosyl hydrolase + cofit
HMPREF1078_RS00925 HMPREF1078_RS00925 UpxY family transcription antiterminator + strong
HMPREF1078_RS00930 HMPREF1078_RS00930 cobyric acid synthase - strong

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