Gene info for HMPREF1078_RS00480 in Parabacteroides merdae CL09T00C40

Annotation: exodeoxyribonuclease III
Type 1: Protein-coding gene
Located on scaffold NZ_JH976524, - strand, nucleotides 110,527 to 111,288
See nucleotide sequence around HMPREF1078_RS00480 or for all of scaffold NZ_JH976524

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS00455 and HMPREF1078_RS00460 are separated by 85 nucleotidesHMPREF1078_RS00460 and HMPREF1078_RS00465 are separated by 35 nucleotidesHMPREF1078_RS00465 and HMPREF1078_RS00470 overlap by 4 nucleotidesHMPREF1078_RS00470 and HMPREF1078_RS00475 overlap by 4 nucleotidesHMPREF1078_RS00475 and HMPREF1078_RS00480 overlap by 31 nucleotidesHMPREF1078_RS00480 and HMPREF1078_RS00485 are separated by 351 nucleotidesHMPREF1078_RS00485 and HMPREF1078_RS00490 are separated by 44 nucleotidesHMPREF1078_RS00490 and HMPREF1078_RS00495 are separated by 188 nucleotidesHMPREF1078_RS00495 and HMPREF1078_RS00500 are separated by 256 nucleotidesHMPREF1078_RS00500 and HMPREF1078_RS00505 are separated by 108 nucleotides HMPREF1078_RS00455: HMPREF1078_RS00455 - xylose isomerase, at 105,121 to 106,449 _RS00455 HMPREF1078_RS00460: HMPREF1078_RS00460 - D-xylose transporter XylE, at 106,535 to 108,079 _RS00460 HMPREF1078_RS00465: HMPREF1078_RS00465 - monofunctional biosynthetic peptidoglycan transglycosylase, at 108,115 to 108,933 _RS00465 HMPREF1078_RS00470: HMPREF1078_RS00470 - lipoyl(octanoyl) transferase LipB, at 108,930 to 109,598 _RS00470 HMPREF1078_RS00475: HMPREF1078_RS00475 - tRNA-dihydrouridine synthase family protein, at 109,595 to 110,557 _RS00475 HMPREF1078_RS00480: HMPREF1078_RS00480 - exodeoxyribonuclease III, at 110,527 to 111,288 _RS00480 HMPREF1078_RS00485: HMPREF1078_RS00485 - linear amide C-N hydrolase, at 111,640 to 112,689 _RS00485 HMPREF1078_RS00490: HMPREF1078_RS00490 - ADP-ribosylglycohydrolase family protein, at 112,734 to 113,507 _RS00490 HMPREF1078_RS00495: HMPREF1078_RS00495 - hypothetical protein, at 113,696 to 114,052 _RS00495 HMPREF1078_RS00500: HMPREF1078_RS00500 - ATP-dependent chaperone ClpB, at 114,309 to 116,897 _RS00500 HMPREF1078_RS00505: HMPREF1078_RS00505 - RecQ family ATP-dependent DNA helicase, at 117,006 to 118,712 _RS00505
Locus Name Description Strand Phenotype
HMPREF1078_RS00455 HMPREF1078_RS00455 xylose isomerase + strong
HMPREF1078_RS00460 HMPREF1078_RS00460 D-xylose transporter XylE + strong
HMPREF1078_RS00465 HMPREF1078_RS00465 monofunctional biosynthetic peptidoglycan transglycosylase + strong
HMPREF1078_RS00470 HMPREF1078_RS00470 lipoyl(octanoyl) transferase LipB + insig.
HMPREF1078_RS00475 HMPREF1078_RS00475 tRNA-dihydrouridine synthase family protein + insig.
HMPREF1078_RS00480 HMPREF1078_RS00480 exodeoxyribonuclease III - insig.
HMPREF1078_RS00485 HMPREF1078_RS00485 linear amide C-N hydrolase + insig.
HMPREF1078_RS00490 HMPREF1078_RS00490 ADP-ribosylglycohydrolase family protein + insig.
HMPREF1078_RS00495 HMPREF1078_RS00495 hypothetical protein + insig.
HMPREF1078_RS00500 HMPREF1078_RS00500 ATP-dependent chaperone ClpB + insig.
HMPREF1078_RS00505 HMPREF1078_RS00505 RecQ family ATP-dependent DNA helicase + insig.

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