Gene info for HMPREF1078_RS00350 in Parabacteroides merdae CL09T00C40

Annotation: transporter substrate-binding domain-containing protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976524, - strand, nucleotides 79,953 to 80,780
See nucleotide sequence around HMPREF1078_RS00350 or for all of scaffold NZ_JH976524

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS00325 and HMPREF1078_RS00330 are separated by 4 nucleotidesHMPREF1078_RS00330 and HMPREF1078_RS00335 are separated by 183 nucleotidesHMPREF1078_RS00335 and HMPREF1078_RS00340 are separated by 166 nucleotidesHMPREF1078_RS00340 and HMPREF1078_RS00345 are separated by 188 nucleotidesHMPREF1078_RS00345 and HMPREF1078_RS00350 are separated by 9 nucleotidesHMPREF1078_RS00350 and HMPREF1078_RS00355 are separated by 4 nucleotidesHMPREF1078_RS00355 and HMPREF1078_RS00360 are separated by 105 nucleotidesHMPREF1078_RS00360 and HMPREF1078_RS00365 are separated by 25 nucleotidesHMPREF1078_RS00365 and HMPREF1078_RS19440 are separated by 123 nucleotidesHMPREF1078_RS19440 and HMPREF1078_RS00370 are separated by 41 nucleotides HMPREF1078_RS00325: HMPREF1078_RS00325 - C4-type zinc ribbon domain-containing protein, at 72,425 to 73,189 _RS00325 HMPREF1078_RS00330: HMPREF1078_RS00330 - tRNA lysidine(34) synthetase TilS, at 73,194 to 74,528 _RS00330 HMPREF1078_RS00335: HMPREF1078_RS00335 - transcription termination factor Rho, at 74,712 to 76,760 _RS00335 HMPREF1078_RS00340: HMPREF1078_RS00340 - DEAD/DEAH box helicase, at 76,927 to 78,210 _RS00340 HMPREF1078_RS00345: HMPREF1078_RS00345 - ATP-binding protein, at 78,399 to 79,943 _RS00345 HMPREF1078_RS00350: HMPREF1078_RS00350 - transporter substrate-binding domain-containing protein, at 79,953 to 80,780 _RS00350 HMPREF1078_RS00355: HMPREF1078_RS00355 - putative porin, at 80,785 to 82,896 _RS00355 HMPREF1078_RS00360: HMPREF1078_RS00360 - 2-oxoacid:acceptor oxidoreductase family protein, at 83,002 to 83,556 _RS00360 HMPREF1078_RS00365: HMPREF1078_RS00365 - thiamine pyrophosphate-dependent enzyme, at 83,582 to 84,346 _RS00365 HMPREF1078_RS19440: HMPREF1078_RS19440 - hypothetical protein, at 84,470 to 84,643 _RS19440 HMPREF1078_RS00370: HMPREF1078_RS00370 - 3-methyl-2-oxobutanoate dehydrogenase subunit VorB, at 84,685 to 85,767 _RS00370
Locus Name Description Strand Phenotype
HMPREF1078_RS00325 HMPREF1078_RS00325 C4-type zinc ribbon domain-containing protein + no data
HMPREF1078_RS00330 HMPREF1078_RS00330 tRNA lysidine(34) synthetase TilS + no data
HMPREF1078_RS00335 HMPREF1078_RS00335 transcription termination factor Rho + no data
HMPREF1078_RS00340 HMPREF1078_RS00340 DEAD/DEAH box helicase - strong
HMPREF1078_RS00345 HMPREF1078_RS00345 ATP-binding protein + insig.
HMPREF1078_RS00350 HMPREF1078_RS00350 transporter substrate-binding domain-containing protein - insig.
HMPREF1078_RS00355 HMPREF1078_RS00355 putative porin - no data
HMPREF1078_RS00360 HMPREF1078_RS00360 2-oxoacid:acceptor oxidoreductase family protein - no data
HMPREF1078_RS00365 HMPREF1078_RS00365 thiamine pyrophosphate-dependent enzyme - no data
HMPREF1078_RS19440 HMPREF1078_RS19440 hypothetical protein - insig.
HMPREF1078_RS00370 HMPREF1078_RS00370 3-methyl-2-oxobutanoate dehydrogenase subunit VorB - no data

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