Gene info for HMPREF1078_RS00170 in Parabacteroides merdae CL09T00C40

Annotation: DUF308 domain-containing protein
Type 1: Protein-coding gene
Located on scaffold NZ_JH976524, - strand, nucleotides 40,492 to 41,070
See nucleotide sequence around HMPREF1078_RS00170 or for all of scaffold NZ_JH976524

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS00145 and HMPREF1078_RS00150 are separated by 61 nucleotidesHMPREF1078_RS00150 and HMPREF1078_RS00155 are separated by 678 nucleotidesHMPREF1078_RS00155 and HMPREF1078_RS00160 are separated by 3 nucleotidesHMPREF1078_RS00160 and HMPREF1078_RS00165 are separated by 17 nucleotidesHMPREF1078_RS00165 and HMPREF1078_RS00170 are separated by 237 nucleotidesHMPREF1078_RS00170 and HMPREF1078_RS00175 are separated by 198 nucleotidesHMPREF1078_RS00175 and HMPREF1078_RS00180 overlap by 8 nucleotidesHMPREF1078_RS00180 and HMPREF1078_RS00185 are separated by 58 nucleotidesHMPREF1078_RS00185 and HMPREF1078_RS00190 are separated by 110 nucleotidesHMPREF1078_RS00190 and HMPREF1078_RS00195 are separated by 96 nucleotides HMPREF1078_RS00145: HMPREF1078_RS00145 - anthranilate synthase component I family protein, at 32,299 to 33,702 _RS00145 HMPREF1078_RS00150: HMPREF1078_RS00150 - tryptophan synthase subunit beta, at 33,764 to 34,957 _RS00150 HMPREF1078_RS00155: HMPREF1078_RS00155 - FecR domain-containing protein, at 35,636 to 36,517 _RS00155 HMPREF1078_RS00160: HMPREF1078_RS00160 - TonB-dependent receptor, at 36,521 to 39,229 _RS00160 HMPREF1078_RS00165: HMPREF1078_RS00165 - DUF4249 domain-containing protein, at 39,247 to 40,254 _RS00165 HMPREF1078_RS00170: HMPREF1078_RS00170 - DUF308 domain-containing protein, at 40,492 to 41,070 _RS00170 HMPREF1078_RS00175: HMPREF1078_RS00175 - glucose-1-phosphate thymidylyltransferase RfbA, at 41,269 to 42,153 _RS00175 HMPREF1078_RS00180: HMPREF1078_RS00180 - GDP-L-fucose synthase, at 42,146 to 43,216 _RS00180 HMPREF1078_RS00185: HMPREF1078_RS00185 - GDP-mannose 4,6-dehydratase, at 43,275 to 44,426 _RS00185 HMPREF1078_RS00190: HMPREF1078_RS00190 - OmpA family protein, at 44,537 to 45,685 _RS00190 HMPREF1078_RS00195: HMPREF1078_RS00195 - undecaprenyl-phosphate glucose phosphotransferase, at 45,782 to 47,179 _RS00195
Locus Name Description Strand Phenotype
HMPREF1078_RS00145 HMPREF1078_RS00145 anthranilate synthase component I family protein - strong
HMPREF1078_RS00150 HMPREF1078_RS00150 tryptophan synthase subunit beta - strong
HMPREF1078_RS00155 HMPREF1078_RS00155 FecR domain-containing protein + insig.
HMPREF1078_RS00160 HMPREF1078_RS00160 TonB-dependent receptor + cofit
HMPREF1078_RS00165 HMPREF1078_RS00165 DUF4249 domain-containing protein + insig.
HMPREF1078_RS00170 HMPREF1078_RS00170 DUF308 domain-containing protein - insig.
HMPREF1078_RS00175 HMPREF1078_RS00175 glucose-1-phosphate thymidylyltransferase RfbA + no data
HMPREF1078_RS00180 HMPREF1078_RS00180 GDP-L-fucose synthase + strong
HMPREF1078_RS00185 HMPREF1078_RS00185 GDP-mannose 4,6-dehydratase + strong
HMPREF1078_RS00190 HMPREF1078_RS00190 OmpA family protein + strong
HMPREF1078_RS00195 HMPREF1078_RS00195 undecaprenyl-phosphate glucose phosphotransferase + strong

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