Gene info for HMPREF1078_RS00120 in Parabacteroides merdae CL09T00C40

Annotation: tryptophan synthase subunit alpha
Type 1: Protein-coding gene
Located on scaffold NZ_JH976524, - strand, nucleotides 28,390 to 29,160
See nucleotide sequence around HMPREF1078_RS00120 or for all of scaffold NZ_JH976524

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS00100 and HMPREF1078_RS00105 are separated by 9 nucleotidesHMPREF1078_RS00105 and HMPREF1078_RS00110 are separated by 75 nucleotidesHMPREF1078_RS00110 and HMPREF1078_RS19665 are separated by 179 nucleotidesHMPREF1078_RS19665 and HMPREF1078_RS00115 are separated by 548 nucleotidesHMPREF1078_RS00115 and HMPREF1078_RS00120 are separated by 303 nucleotidesHMPREF1078_RS00120 and HMPREF1078_RS00125 are separated by 22 nucleotidesHMPREF1078_RS00125 and HMPREF1078_RS00130 overlap by 4 nucleotidesHMPREF1078_RS00130 and HMPREF1078_RS00135 are separated by 10 nucleotidesHMPREF1078_RS00135 and HMPREF1078_RS00140 are separated by 30 nucleotidesHMPREF1078_RS00140 and HMPREF1078_RS00145 are separated by 29 nucleotides HMPREF1078_RS00100: HMPREF1078_RS00100 - thioredoxin-dependent thiol peroxidase, at 23,283 to 23,741 _RS00100 HMPREF1078_RS00105: HMPREF1078_RS00105 - radical SAM protein, at 23,751 to 24,767 _RS00105 HMPREF1078_RS00110: HMPREF1078_RS00110 - saccharopine dehydrogenase family protein, at 24,843 to 26,036 _RS00110 HMPREF1078_RS19665: HMPREF1078_RS19665 - helix-turn-helix domain-containing protein, at 26,216 to 26,326 _RS19665 HMPREF1078_RS00115: HMPREF1078_RS00115 - IS256 family transposase, at 26,875 to 28,086 _RS00115 HMPREF1078_RS00120: HMPREF1078_RS00120 - tryptophan synthase subunit alpha, at 28,390 to 29,160 _RS00120 HMPREF1078_RS00125: HMPREF1078_RS00125 - phosphoribosylanthranilate isomerase, at 29,183 to 29,848 _RS00125 HMPREF1078_RS00130: HMPREF1078_RS00130 - indole-3-glycerol phosphate synthase TrpC, at 29,845 to 30,654 _RS00130 HMPREF1078_RS00135: HMPREF1078_RS00135 - anthranilate phosphoribosyltransferase, at 30,665 to 31,669 _RS00135 HMPREF1078_RS00140: HMPREF1078_RS00140 - aminodeoxychorismate/anthranilate synthase component II, at 31,700 to 32,269 _RS00140 HMPREF1078_RS00145: HMPREF1078_RS00145 - anthranilate synthase component I family protein, at 32,299 to 33,702 _RS00145
Locus Name Description Strand Phenotype
HMPREF1078_RS00100 HMPREF1078_RS00100 thioredoxin-dependent thiol peroxidase - cofit
HMPREF1078_RS00105 HMPREF1078_RS00105 radical SAM protein - cofit
HMPREF1078_RS00110 HMPREF1078_RS00110 saccharopine dehydrogenase family protein - strong
HMPREF1078_RS19665 HMPREF1078_RS19665 helix-turn-helix domain-containing protein - insig.
HMPREF1078_RS00115 HMPREF1078_RS00115 IS256 family transposase + insig.
HMPREF1078_RS00120 HMPREF1078_RS00120 tryptophan synthase subunit alpha - strong
HMPREF1078_RS00125 HMPREF1078_RS00125 phosphoribosylanthranilate isomerase - strong
HMPREF1078_RS00130 HMPREF1078_RS00130 indole-3-glycerol phosphate synthase TrpC - strong
HMPREF1078_RS00135 HMPREF1078_RS00135 anthranilate phosphoribosyltransferase - strong
HMPREF1078_RS00140 HMPREF1078_RS00140 aminodeoxychorismate/anthranilate synthase component II - insig.
HMPREF1078_RS00145 HMPREF1078_RS00145 anthranilate synthase component I family protein - strong

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