Gene info for HMPREF1078_RS00085 in Parabacteroides merdae CL09T00C40

Annotation: PIG-L family deacetylase
Type 1: Protein-coding gene
Located on scaffold NZ_JH976524, - strand, nucleotides 20,555 to 21,193
See nucleotide sequence around HMPREF1078_RS00085 or for all of scaffold NZ_JH976524

Other databases: NCBI

Nearby Genes

500 ntHMPREF1078_RS00060 and HMPREF1078_RS00065 are separated by 76 nucleotidesHMPREF1078_RS00065 and HMPREF1078_RS00070 overlap by 11 nucleotidesHMPREF1078_RS00070 and HMPREF1078_RS00075 are separated by 5 nucleotidesHMPREF1078_RS00075 and HMPREF1078_RS00080 overlap by 4 nucleotidesHMPREF1078_RS00080 and HMPREF1078_RS00085 are separated by 14 nucleotidesHMPREF1078_RS00085 and HMPREF1078_RS00090 are separated by 7 nucleotidesHMPREF1078_RS00090 and HMPREF1078_RS00095 are separated by 72 nucleotidesHMPREF1078_RS00095 and HMPREF1078_RS00100 are separated by 6 nucleotidesHMPREF1078_RS00100 and HMPREF1078_RS00105 are separated by 9 nucleotidesHMPREF1078_RS00105 and HMPREF1078_RS00110 are separated by 75 nucleotides HMPREF1078_RS00060: HMPREF1078_RS00060 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 15,423 to 15,797 _RS00060 HMPREF1078_RS00065: HMPREF1078_RS00065 - class I SAM-dependent methyltransferase, at 15,874 to 16,863 _RS00065 HMPREF1078_RS00070: HMPREF1078_RS00070 - glycosyltransferase, at 16,853 to 17,980 _RS00070 HMPREF1078_RS00075: HMPREF1078_RS00075 - glycosyltransferase, at 17,986 to 19,227 _RS00075 HMPREF1078_RS00080: HMPREF1078_RS00080 - polysaccharide deacetylase family protein, at 19,224 to 20,540 _RS00080 HMPREF1078_RS00085: HMPREF1078_RS00085 - PIG-L family deacetylase, at 20,555 to 21,193 _RS00085 HMPREF1078_RS00090: HMPREF1078_RS00090 - GNAT family N-acetyltransferase, at 21,201 to 22,160 _RS00090 HMPREF1078_RS00095: HMPREF1078_RS00095 - recombinase RecA, at 22,233 to 23,276 _RS00095 HMPREF1078_RS00100: HMPREF1078_RS00100 - thioredoxin-dependent thiol peroxidase, at 23,283 to 23,741 _RS00100 HMPREF1078_RS00105: HMPREF1078_RS00105 - radical SAM protein, at 23,751 to 24,767 _RS00105 HMPREF1078_RS00110: HMPREF1078_RS00110 - saccharopine dehydrogenase family protein, at 24,843 to 26,036 _RS00110
Locus Name Description Strand Phenotype
HMPREF1078_RS00060 HMPREF1078_RS00060 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase + insig.
HMPREF1078_RS00065 HMPREF1078_RS00065 class I SAM-dependent methyltransferase - sig.
HMPREF1078_RS00070 HMPREF1078_RS00070 glycosyltransferase - strong
HMPREF1078_RS00075 HMPREF1078_RS00075 glycosyltransferase - strong
HMPREF1078_RS00080 HMPREF1078_RS00080 polysaccharide deacetylase family protein - strong
HMPREF1078_RS00085 HMPREF1078_RS00085 PIG-L family deacetylase - strong
HMPREF1078_RS00090 HMPREF1078_RS00090 GNAT family N-acetyltransferase - strong
HMPREF1078_RS00095 HMPREF1078_RS00095 recombinase RecA - strong
HMPREF1078_RS00100 HMPREF1078_RS00100 thioredoxin-dependent thiol peroxidase - strong
HMPREF1078_RS00105 HMPREF1078_RS00105 radical SAM protein - cofit
HMPREF1078_RS00110 HMPREF1078_RS00110 saccharopine dehydrogenase family protein - strong

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