Gene info for HMPREF1058_RS10560 in Phocaeicola vulgatus CL09T03C04

Annotation: arabinan endo-1,5-alpha-L-arabinosidase
Type 1: Protein-coding gene
Located on scaffold NZ_JH724283, - strand, nucleotides 627,109 to 628,992
See nucleotide sequence around HMPREF1058_RS10560 or for all of scaffold NZ_JH724283

Other databases: NCBI, uniprot: I8ZV05

Nearby Genes

500 ntHMPREF1058_RS10585 and HMPREF1058_RS10580 are separated by 21 nucleotidesHMPREF1058_RS10580 and HMPREF1058_RS10575 are separated by 7 nucleotidesHMPREF1058_RS10575 and HMPREF1058_RS10570 overlap by 4 nucleotidesHMPREF1058_RS10570 and HMPREF1058_RS10565 are separated by 226 nucleotidesHMPREF1058_RS10565 and HMPREF1058_RS10560 are separated by 374 nucleotidesHMPREF1058_RS10560 and HMPREF1058_RS10555 are separated by 73 nucleotidesHMPREF1058_RS10555 and HMPREF1058_RS10550 are separated by 24 nucleotidesHMPREF1058_RS10550 and HMPREF1058_RS10545 are separated by 19 nucleotidesHMPREF1058_RS10545 and HMPREF1058_RS10540 are separated by 439 nucleotidesHMPREF1058_RS10540 and HMPREF1058_RS10535 are separated by 132 nucleotides HMPREF1058_RS10585: HMPREF1058_RS10585 - acyl carrier protein, at 621,259 to 621,510 _RS10585 HMPREF1058_RS10580: HMPREF1058_RS10580 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 621,532 to 622,761 _RS10580 HMPREF1058_RS10575: HMPREF1058_RS10575 - 3-oxoacyl-ACP reductase FabG, at 622,769 to 623,497 _RS10575 HMPREF1058_RS10570: HMPREF1058_RS10570 - aromatic amino acid lyase, at 623,494 to 625,026 _RS10570 HMPREF1058_RS10565: HMPREF1058_RS10565 - cysteine--tRNA ligase, at 625,253 to 626,734 _RS10565 HMPREF1058_RS10560: HMPREF1058_RS10560 - arabinan endo-1,5-alpha-L-arabinosidase, at 627,109 to 628,992 _RS10560 HMPREF1058_RS10555: HMPREF1058_RS10555 - bacterial Ig-like domain-containing protein, at 629,066 to 630,844 _RS10555 HMPREF1058_RS10550: HMPREF1058_RS10550 - RagB/SusD family nutrient uptake outer membrane protein, at 630,869 to 632,620 _RS10550 HMPREF1058_RS10545: HMPREF1058_RS10545 - TonB-dependent receptor, at 632,640 to 635,849 _RS10545 HMPREF1058_RS10540: HMPREF1058_RS10540 - glycoside hydrolase family 97 protein, at 636,289 to 638,217 _RS10540 HMPREF1058_RS10535: HMPREF1058_RS10535 - response regulator, at 638,350 to 642,576 _RS10535
Locus Name Description Strand Phenotype
HMPREF1058_RS10585 HMPREF1058_RS10585 acyl carrier protein - insig.
HMPREF1058_RS10580 HMPREF1058_RS10580 beta-ketoacyl-[acyl-carrier-protein] synthase family protein - insig.
HMPREF1058_RS10575 HMPREF1058_RS10575 3-oxoacyl-ACP reductase FabG - insig.
HMPREF1058_RS10570 HMPREF1058_RS10570 aromatic amino acid lyase - insig.
HMPREF1058_RS10565 HMPREF1058_RS10565 cysteine--tRNA ligase - no data
HMPREF1058_RS10560 HMPREF1058_RS10560 arabinan endo-1,5-alpha-L-arabinosidase - strong
HMPREF1058_RS10555 HMPREF1058_RS10555 bacterial Ig-like domain-containing protein - strong
HMPREF1058_RS10550 HMPREF1058_RS10550 RagB/SusD family nutrient uptake outer membrane protein - strong
HMPREF1058_RS10545 HMPREF1058_RS10545 TonB-dependent receptor - strong
HMPREF1058_RS10540 HMPREF1058_RS10540 glycoside hydrolase family 97 protein - sig.
HMPREF1058_RS10535 HMPREF1058_RS10535 response regulator - strong

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