Gene info for HMPREF1058_RS00535 in Phocaeicola vulgatus CL09T03C04

Annotation: 16S rRNA processing protein RimM
Type 1: Protein-coding gene
Located on scaffold NZ_JH724290, - strand, nucleotides 58,566 to 59,084
See nucleotide sequence around HMPREF1058_RS00535 or for all of scaffold NZ_JH724290

Other databases: NCBI, uniprot: I8ZBI1

Nearby Genes

500 ntHMPREF1058_RS00560 and HMPREF1058_RS00555 are separated by 5 nucleotidesHMPREF1058_RS00555 and HMPREF1058_RS00550 are separated by 574 nucleotidesHMPREF1058_RS00550 and HMPREF1058_RS00545 are separated by 56 nucleotidesHMPREF1058_RS00545 and HMPREF1058_RS00540 are separated by 7 nucleotidesHMPREF1058_RS00540 and HMPREF1058_RS00535 are separated by 18 nucleotidesHMPREF1058_RS00535 and HMPREF1058_RS00530 are separated by 11 nucleotidesHMPREF1058_RS00530 and HMPREF1058_RS00525 are separated by 18 nucleotidesHMPREF1058_RS00525 and HMPREF1058_RS00520 are separated by 46 nucleotidesHMPREF1058_RS00520 and HMPREF1058_RS00515 are separated by 95 nucleotidesHMPREF1058_RS00515 and HMPREF1058_RS00510 are separated by 46 nucleotides HMPREF1058_RS00560: HMPREF1058_RS00560 - anaerobic ribonucleoside triphosphate reductase, at 51,819 to 54,095 _RS00560 HMPREF1058_RS00555: HMPREF1058_RS00555 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 54,101 to 54,559 _RS00555 HMPREF1058_RS00550: HMPREF1058_RS00550 - RIP metalloprotease RseP, at 55,134 to 56,477 _RS00550 HMPREF1058_RS00545: HMPREF1058_RS00545 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 56,534 to 57,682 _RS00545 HMPREF1058_RS00540: HMPREF1058_RS00540 - M23 family metallopeptidase, at 57,690 to 58,547 _RS00540 HMPREF1058_RS00535: HMPREF1058_RS00535 - 16S rRNA processing protein RimM, at 58,566 to 59,084 _RS00535 HMPREF1058_RS00530: HMPREF1058_RS00530 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 59,096 to 60,400 _RS00530 HMPREF1058_RS00525: HMPREF1058_RS00525 - DUF4290 domain-containing protein, at 60,419 to 61,045 _RS00525 HMPREF1058_RS00520: HMPREF1058_RS00520 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 61,092 to 61,781 _RS00520 HMPREF1058_RS00515: HMPREF1058_RS00515 - YicC family protein, at 61,877 to 62,752 _RS00515 HMPREF1058_RS00510: HMPREF1058_RS00510 - guanylate kinase, at 62,799 to 63,368 _RS00510
Locus Name Description Strand Phenotype
HMPREF1058_RS00560 HMPREF1058_RS00560 anaerobic ribonucleoside triphosphate reductase + strong
HMPREF1058_RS00555 HMPREF1058_RS00555 anaerobic ribonucleoside-triphosphate reductase activating protein + no data
HMPREF1058_RS00550 HMPREF1058_RS00550 RIP metalloprotease RseP - no data
HMPREF1058_RS00545 HMPREF1058_RS00545 1-deoxy-D-xylulose-5-phosphate reductoisomerase - no data
HMPREF1058_RS00540 HMPREF1058_RS00540 M23 family metallopeptidase - strong
HMPREF1058_RS00535 HMPREF1058_RS00535 16S rRNA processing protein RimM - no data
HMPREF1058_RS00530 HMPREF1058_RS00530 UDP-N-acetylglucosamine 1-carboxyvinyltransferase - no data
HMPREF1058_RS00525 HMPREF1058_RS00525 DUF4290 domain-containing protein - strong
HMPREF1058_RS00520 HMPREF1058_RS00520 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB - no data
HMPREF1058_RS00515 HMPREF1058_RS00515 YicC family protein + strong
HMPREF1058_RS00510 HMPREF1058_RS00510 guanylate kinase + no data

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