Gene info for Ga0059261_2051 in Sphingomonas koreensis DSMZ 15582

Updated annotation (from data): diaminopimelate decarboxylase (EC 4.1.1.20)
Rationale: Important for fitness in most defined media. Semi-automated annotation based on the auxotrophic phenotype and a hit to HMM TIGR01048.
Original annotation: diaminopimelate decarboxylase
Type 1: Protein-coding gene
Located on scaffold Ga0059261_unitig_0_quiver.1, + strand, nucleotides 2,154,473 to 2,155,732
See nucleotide sequence around Ga0059261_2051 or for all of scaffold Ga0059261_unitig_0_quiver.1

Other databases: NCBI, uniprot: A0A2M8WCU6

Nearby Genes

500 ntGa0059261_2046 and Ga0059261_2047 are separated by 113 nucleotidesGa0059261_2047 and Ga0059261_2048 are separated by 557 nucleotidesGa0059261_2048 and Ga0059261_2049 are separated by 16 nucleotidesGa0059261_2049 and Ga0059261_2050 are separated by 3 nucleotidesGa0059261_2050 and Ga0059261_2051 are separated by 19 nucleotidesGa0059261_2051 and Ga0059261_2052 overlap by 4 nucleotidesGa0059261_2052 and Ga0059261_2053 overlap by 4 nucleotidesGa0059261_2053 and Ga0059261_2054 overlap by 23 nucleotidesGa0059261_2054 and Ga0059261_2055 are separated by 70 nucleotidesGa0059261_2055 and Ga0059261_2056 are separated by 67 nucleotides Ga0059261_2046: Ga0059261_2046 - Outer membrane receptor proteins, mostly Fe transport, at 2,148,671 to 2,150,902 _2046 Ga0059261_2047: Ga0059261_2047 - transcriptional regulator, TetR family, at 2,151,016 to 2,151,675 _2047 Ga0059261_2048: Ga0059261_2048 - Thiol-disulfide isomerase and thioredoxins, at 2,152,233 to 2,152,829 _2048 Ga0059261_2049: Ga0059261_2049 - argininosuccinate lyase, at 2,152,846 to 2,154,216 _2049 Ga0059261_2050: Ga0059261_2050 - hypothetical protein, at 2,154,220 to 2,154,453 _2050 Ga0059261_2051: Ga0059261_2051 - diaminopimelate decarboxylase (EC 4.1.1.20) (from data), at 2,154,473 to 2,155,732 _2051 Ga0059261_2052: Ga0059261_2052 - siroheme synthase, N-terminal domain, at 2,155,729 to 2,156,484 _2052 Ga0059261_2053: Ga0059261_2053 - Mg2+ and Co2+ transporters, at 2,156,481 to 2,157,431 _2053 Ga0059261_2054: Ga0059261_2054 - Response regulator receiver domain, at 2,157,409 to 2,158,014 _2054 Ga0059261_2055: Ga0059261_2055 - Predicted flavoprotein, at 2,158,085 to 2,158,630 _2055 Ga0059261_2056: Ga0059261_2056 - Predicted acyl-CoA transferases/carnitine dehydratase, at 2,158,698 to 2,159,762 _2056
Locus Name Description Strand Phenotype
Ga0059261_2046 Ga0059261_2046 Outer membrane receptor proteins, mostly Fe transport - cofit
Ga0059261_2047 Ga0059261_2047 transcriptional regulator, TetR family + insig.
Ga0059261_2048 Ga0059261_2048 Thiol-disulfide isomerase and thioredoxins - strong
Ga0059261_2049 Ga0059261_2049 argininosuccinate lyase + strong
Ga0059261_2050 Ga0059261_2050 hypothetical protein + strong
Ga0059261_2051 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) + strong
Ga0059261_2052 Ga0059261_2052 siroheme synthase, N-terminal domain + strong
Ga0059261_2053 Ga0059261_2053 Mg2+ and Co2+ transporters + insig.
Ga0059261_2054 Ga0059261_2054 Response regulator receiver domain - insig.
Ga0059261_2055 Ga0059261_2055 Predicted flavoprotein - insig.
Ga0059261_2056 Ga0059261_2056 Predicted acyl-CoA transferases/carnitine dehydratase + insig.

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