Gene info for Psest_0085 in Pseudomonas stutzeri RCH2

Updated annotation (from data): alpha-ketoglutarate TRAP transporter, solute receptor component
Rationale: specific phenotype on a-ketoglutarate and no other transporter for this substrate is apparent in the fitness data. (Mutants in another TRAP system, Psest_4268:Psest_4270, have a much milder defect in a-ketoglutarate utilization).
Original annotation: TRAP transporter solute receptor, TAXI family
Type 1: Protein-coding gene
Located on scaffold Psest_Contig47.1, - strand, nucleotides 87,238 to 88,191
See nucleotide sequence around Psest_0085 or for all of scaffold Psest_Contig47.1

Other databases: NCBI, IMG: 2507210318, uniprot: L0GD92

Nearby Genes

500 ntPsest_0080 and Psest_0081 are separated by 217 nucleotidesPsest_0081 and Psest_0082 are separated by 10 nucleotidesPsest_0082 and Psest_0083 are separated by 936 nucleotidesPsest_0083 and Psest_0084 overlap by 4 nucleotidesPsest_0084 and Psest_0085 are separated by 134 nucleotidesPsest_0085 and Psest_0086 are separated by 354 nucleotidesPsest_0086 and Psest_0087 are separated by 71 nucleotidesPsest_0087 and Psest_0088 are separated by 273 nucleotidesPsest_0088 and Psest_0089 overlap by 10 nucleotidesPsest_0089 and Psest_0090 are separated by 98 nucleotides Psest_0080: Psest_0080 - Predicted aminopeptidase, at 80,563 to 81,621 _0080 Psest_0081: Psest_0081 - hypothetical protein, at 81,839 to 83,008 _0081 Psest_0082: Psest_0082 - Domain of unknown function (DUF892)., at 83,019 to 83,738 _0082 Psest_0083: Psest_0083 - Uncharacterized conserved protein, at 84,675 to 85,082 _0083 Psest_0084: Psest_0084 - alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data), at 85,079 to 87,103 _0084 Psest_0085: Psest_0085 - alpha-ketoglutarate TRAP transporter, solute receptor component (from data), at 87,238 to 88,191 _0085 Psest_0086: Psest_0086 - hypothetical protein, at 88,546 to 88,971 _0086 Psest_0087: Psest_0087 - hypothetical protein, at 89,043 to 89,285 _0087 Psest_0088: Psest_0088 - phosphonate metabolism protein PhnP, at 89,559 to 90,308 _0088 Psest_0089: Psest_0089 - phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN, at 90,299 to 90,853 _0089 Psest_0090: Psest_0090 - phosphonate metabolism protein PhnM, at 90,952 to 92,097 _0090
Locus Name Description Strand Phenotype
Psest_0080 Psest_0080 Predicted aminopeptidase + insig.
Psest_0081 Psest_0081 hypothetical protein + insig.
Psest_0082 Psest_0082 Domain of unknown function (DUF892). + insig.
Psest_0083 Psest_0083 Uncharacterized conserved protein - strong
Psest_0084 Psest_0084 alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data) - strong
Psest_0085 Psest_0085 alpha-ketoglutarate TRAP transporter, solute receptor component (from data) - strong
Psest_0086 Psest_0086 hypothetical protein + insig.
Psest_0087 Psest_0087 hypothetical protein + insig.
Psest_0088 Psest_0088 phosphonate metabolism protein PhnP - insig.
Psest_0089 Psest_0089 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN - strong
Psest_0090 Psest_0090 phosphonate metabolism protein PhnM - insig.

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