Gene info for Psest_2014 in Pseudomonas stutzeri RCH2

Updated annotation (from data): Isocitrate lyase (EC 4.1.3.1)
Rationale: Specifically important for utilizing Sodium butyrate and Tween 20. Automated validation from mutant phenotype: the predicted function (ISOCIT-CLEAV-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: Isocitrate lyase
Type 1: Protein-coding gene
Located on scaffold Psest_Contig47.1, - strand, nucleotides 2,132,881 to 2,134,476
See nucleotide sequence around Psest_2014 or for all of scaffold Psest_Contig47.1

Other databases: NCBI, IMG: 2507212246, uniprot: L0GIJ4

Nearby Genes

500 ntPsest_2009 and Psest_2010 are separated by 564 nucleotidesPsest_2010 and Psest_2011 are separated by 218 nucleotidesPsest_2011 and Psest_2012 are separated by 123 nucleotidesPsest_2012 and Psest_2013 are separated by 16 nucleotidesPsest_2013 and Psest_2014 are separated by 191 nucleotidesPsest_2014 and Psest_2015 are separated by 484 nucleotidesPsest_2015 and Psest_2016 overlap by 4 nucleotidesPsest_2016 and Psest_2017 are separated by 6 nucleotidesPsest_2017 and Psest_2018 overlap by 8 nucleotidesPsest_2018 and Psest_2019 are separated by 76 nucleotides Psest_2009: Psest_2009 - 5S rRNA, at 2,126,874 to 2,126,989 _2009 Psest_2010: Psest_2010 - queuosine biosynthesis protein QueD, at 2,127,554 to 2,127,925 _2010 Psest_2011: Psest_2011 - Predicted permease, at 2,128,144 to 2,129,460 _2011 Psest_2012: Psest_2012 - Predicted permease, at 2,129,584 to 2,130,678 _2012 Psest_2013: Psest_2013 - Predicted phosphatase, at 2,130,695 to 2,132,689 _2013 Psest_2014: Psest_2014 - Isocitrate lyase (EC 4.1.3.1) (from data), at 2,132,881 to 2,134,476 _2014 Psest_2015: Psest_2015 - Type II secretory pathway, component PulD, at 2,134,961 to 2,135,770 _2015 Psest_2016: Psest_2016 - hypothetical protein, at 2,135,767 to 2,136,396 _2016 Psest_2017: Psest_2017 - Predicted acyltransferase, at 2,136,403 to 2,136,828 _2017 Psest_2018: Psest_2018 - Uncharacterized conserved protein, at 2,136,821 to 2,137,987 _2018 Psest_2019: Psest_2019 - adenylosuccinate lyase, at 2,138,064 to 2,139,434 _2019
Locus Name Description Strand Phenotype
Psest_2009 Psest_2009 5S rRNA + no data
Psest_2010 Psest_2010 queuosine biosynthesis protein QueD + no data
Psest_2011 Psest_2011 Predicted permease + strong
Psest_2012 Psest_2012 Predicted permease + insig.
Psest_2013 Psest_2013 Predicted phosphatase - insig.
Psest_2014 Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) - strong
Psest_2015 Psest_2015 Type II secretory pathway, component PulD - sig.
Psest_2016 Psest_2016 hypothetical protein - insig.
Psest_2017 Psest_2017 Predicted acyltransferase - strong
Psest_2018 Psest_2018 Uncharacterized conserved protein - strong
Psest_2019 Psest_2019 adenylosuccinate lyase - no data

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