Gene info for PGA1_c13990 in Phaeobacter inhibens DSM 17395

Updated annotation (from data): Novel Xylose regulator from LacI family
Rationale: Specifically important in carbon source D-Xylose. Also see expression evidence (PMC4148808). (SEED_correct)
Original annotation: putative transcriptional regulator, iacl family
Type 1: Protein-coding gene
Located on scaffold PGA1_c, + strand, nucleotides 1,447,602 to 1,448,663
See nucleotide sequence around PGA1_c13990 or for all of scaffold PGA1_c

Other databases: NCBI, IMG: 2510179961, uniprot: I7EWE4

Nearby Genes

500 ntPGA1_c13940 and PGA1_c13950 are separated by 95 nucleotidesPGA1_c13950 and PGA1_c13960 overlap by 4 nucleotidesPGA1_c13960 and PGA1_c13970 overlap by 4 nucleotidesPGA1_c13970 and PGA1_c13980 are separated by 92 nucleotidesPGA1_c13980 and PGA1_c13990 are separated by 196 nucleotidesPGA1_c13990 and PGA1_c14000 are separated by 2 nucleotidesPGA1_c14000 and PGA1_c14010 are separated by 39 nucleotidesPGA1_c14010 and PGA1_c14020 are separated by 501 nucleotidesPGA1_c14020 and PGA1_c14030 are separated by 11 nucleotidesPGA1_c14030 and PGA1_c14040 are separated by 246 nucleotides PGA1_c13940: PGA1_c13940 - ADP-ribose pyrophosphatase-like protein, at 1,441,755 to 1,442,879 _c13940 PGA1_c13950: PGA1_c13950 - cysteine synthase CysK, at 1,442,975 to 1,444,009 _c13950 PGA1_c13960: PGA1_c13960 - putative mechanosensitive ion channel protein, at 1,444,006 to 1,446,495 _c13960 PGA1_c13970: PGA1_c13970 - threonyl/alanyl tRNA synthetase-like protein, at 1,446,492 to 1,447,223 _c13970 PGA1_c13980: PGA1_c13980 - tRNA-Ser, at 1,447,316 to 1,447,405 _c13980 PGA1_c13990: PGA1_c13990 - Novel Xylose regulator from LacI family (from data), at 1,447,602 to 1,448,663 _c13990 PGA1_c14000: PGA1_c14000 - Xylose isomerase (EC 5.3.1.5) (from data), at 1,448,666 to 1,449,970 _c14000 PGA1_c14010: PGA1_c14010 - Xylulose kinase (EC 2.7.1.17) (from data), at 1,450,010 to 1,451,446 _c14010 PGA1_c14020: PGA1_c14020 - hypothetical protein, at 1,451,948 to 1,452,565 _c14020 PGA1_c14030: PGA1_c14030 - Uncharacterized MobA-related protein, at 1,452,577 to 1,453,203 _c14030 PGA1_c14040: PGA1_c14040 - dimethylglycine dehydrogenase DmgdH, at 1,453,450 to 1,455,867 _c14040
Locus Name Description Strand Phenotype
PGA1_c13940 PGA1_c13940 ADP-ribose pyrophosphatase-like protein + insig.
PGA1_c13950 PGA1_c13950 cysteine synthase CysK + no data
PGA1_c13960 PGA1_c13960 putative mechanosensitive ion channel protein + strong
PGA1_c13970 PGA1_c13970 threonyl/alanyl tRNA synthetase-like protein + insig.
PGA1_c13980 PGA1_c13980 tRNA-Ser + no data
PGA1_c13990 PGA1_c13990 Novel Xylose regulator from LacI family (from data) + strong
PGA1_c14000 PGA1_c14000 Xylose isomerase (EC 5.3.1.5) (from data) + strong
PGA1_c14010 PGA1_c14010 Xylulose kinase (EC 2.7.1.17) (from data) + strong
PGA1_c14020 PGA1_c14020 hypothetical protein + insig.
PGA1_c14030 PGA1_c14030 Uncharacterized MobA-related protein - insig.
PGA1_c14040 PGA1_c14040 dimethylglycine dehydrogenase DmgdH - insig.

Or browse nearby genes

Or see the comparative fitness browser