Gene info for PGA1_c11910 in Phaeobacter inhibens DSM 17395

Updated annotation (from data): Malate dehydrogenase (decarboxylating) (EC 1.1.1.39)
Rationale: Specifically important for utilizing L-Malic acid disodium salt monohydrate. Automated validation from mutant phenotype: the predicted function (1.1.1.39-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: NAD-dependent malic enzyme
Type 1: Protein-coding gene
Located on scaffold PGA1_c, - strand, nucleotides 1,235,866 to 1,238,154
See nucleotide sequence around PGA1_c11910 or for all of scaffold PGA1_c

Other databases: NCBI, IMG: 2510179755, uniprot: I7DZM6

Nearby Genes

500 ntPGA1_c11860 and PGA1_c11870 are separated by 79 nucleotidesPGA1_c11870 and PGA1_c11880 are separated by 170 nucleotidesPGA1_c11880 and PGA1_c11890 are separated by 358 nucleotidesPGA1_c11890 and PGA1_c11900 are separated by 144 nucleotidesPGA1_c11900 and PGA1_c11910 are separated by 299 nucleotidesPGA1_c11910 and PGA1_c11920 are separated by 151 nucleotidesPGA1_c11920 and PGA1_c11930 are separated by 138 nucleotidesPGA1_c11930 and PGA1_c11940 are separated by 3 nucleotidesPGA1_c11940 and PGA1_c11950 overlap by 1 nucleotidesPGA1_c11950 and PGA1_c11960 are separated by 141 nucleotides PGA1_c11860: PGA1_c11860 - Uncharacterized protein conserved in bacteria, at 1,229,137 to 1,229,421 _c11860 PGA1_c11870: PGA1_c11870 - serine hydroxymethyltransferase GlyA, at 1,229,501 to 1,230,799 _c11870 PGA1_c11880: PGA1_c11880 - putative ATP-NAD kinase, at 1,230,970 to 1,231,731 _c11880 PGA1_c11890: PGA1_c11890 - putative indoleacetamide hydrolase, at 1,232,090 to 1,233,532 _c11890 PGA1_c11900: PGA1_c11900 - Propionate--CoA ligase (EC 6.2.1.17) (from data), at 1,233,677 to 1,235,566 _c11900 PGA1_c11910: PGA1_c11910 - Malate dehydrogenase (decarboxylating) (EC 1.1.1.39) (from data), at 1,235,866 to 1,238,154 _c11910 PGA1_c11920: PGA1_c11920 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 1,238,306 to 1,239,403 _c11920 PGA1_c11930: PGA1_c11930 - Cytidine deaminase (EC 3.5.4.5) (from data), at 1,239,542 to 1,239,934 _c11930 PGA1_c11940: PGA1_c11940 - thymidine phosphorylase DeoA, at 1,239,938 to 1,241,248 _c11940 PGA1_c11950: PGA1_c11950 - phosphopentomutase DeoB, at 1,241,248 to 1,242,468 _c11950 PGA1_c11960: PGA1_c11960 - uracil phosphoribosyltransferase Upp, at 1,242,610 to 1,243,242 _c11960
Locus Name Description Strand Phenotype
PGA1_c11860 PGA1_c11860 Uncharacterized protein conserved in bacteria + insig.
PGA1_c11870 PGA1_c11870 serine hydroxymethyltransferase GlyA - strong
PGA1_c11880 PGA1_c11880 putative ATP-NAD kinase + no data
PGA1_c11890 PGA1_c11890 putative indoleacetamide hydrolase - insig.
PGA1_c11900 PGA1_c11900 Propionate--CoA ligase (EC 6.2.1.17) (from data) - sig.
PGA1_c11910 PGA1_c11910 Malate dehydrogenase (decarboxylating) (EC 1.1.1.39) (from data) - strong
PGA1_c11920 PGA1_c11920 Uncharacterized conserved protein, contains double-stranded beta-helix domain + insig.
PGA1_c11930 PGA1_c11930 Cytidine deaminase (EC 3.5.4.5) (from data) + sig.
PGA1_c11940 PGA1_c11940 thymidine phosphorylase DeoA + insig.
PGA1_c11950 PGA1_c11950 phosphopentomutase DeoB + sig.
PGA1_c11960 PGA1_c11960 uracil phosphoribosyltransferase Upp + sig.

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