Gene info for EX31_RS12400 in Rahnella sp. WP5

Annotation: RNA polymerase factor sigma-54
Type 1: Protein-coding gene
Located on scaffold NZ_JQJR01000012, - strand, nucleotides 148,362 to 149,795
See nucleotide sequence around EX31_RS12400 or for all of scaffold NZ_JQJR01000012

Other databases: NCBI

Nearby Genes

500 ntEX31_RS12375 and EX31_RS12380 are separated by 25 nucleotidesEX31_RS12380 and EX31_RS12385 overlap by 4 nucleotidesEX31_RS12385 and EX31_RS12390 are separated by 67 nucleotidesEX31_RS12390 and EX31_RS12395 are separated by 110 nucleotidesEX31_RS12395 and EX31_RS12400 are separated by 23 nucleotidesEX31_RS12400 and EX31_RS12405 are separated by 101 nucleotidesEX31_RS12405 and EX31_RS12410 are separated by 6 nucleotidesEX31_RS12410 and EX31_RS12415 overlap by 23 nucleotidesEX31_RS12415 and EX31_RS12420 overlap by 4 nucleotidesEX31_RS12420 and EX31_RS12425 are separated by 16 nucleotides EX31_RS12375: EX31_RS12375 - PRD domain-containing protein, at 144,337 to 146,253 _RS12375 EX31_RS12380: EX31_RS12380 - PTS phosphocarrier protein NPr, at 146,279 to 146,551 _RS12380 EX31_RS12385: EX31_RS12385 - RNase adapter RapZ, at 146,548 to 147,402 _RS12385 EX31_RS12390: EX31_RS12390 - PTS IIA-like nitrogen regulatory protein PtsN, at 147,470 to 147,940 _RS12390 EX31_RS12395: EX31_RS12395 - ribosome hibernation promoting factor, at 148,051 to 148,338 _RS12395 EX31_RS12400: EX31_RS12400 - RNA polymerase factor sigma-54, at 148,362 to 149,795 _RS12400 EX31_RS12405: EX31_RS12405 - LPS export ABC transporter ATP-binding protein, at 149,897 to 150,622 _RS12405 EX31_RS12410: EX31_RS12410 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 150,629 to 151,186 _RS12410 EX31_RS12415: EX31_RS12415 - LPS export ABC transporter periplasmic protein LptC, at 151,164 to 151,733 _RS12415 EX31_RS12420: EX31_RS12420 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 151,730 to 152,296 _RS12420 EX31_RS12425: EX31_RS12425 - arabinose-5-phosphate isomerase KdsD, at 152,313 to 153,299 _RS12425
Locus Name Description Strand Phenotype
EX31_RS12375 EX31_RS12375 PRD domain-containing protein + insig.
EX31_RS12380 EX31_RS12380 PTS phosphocarrier protein NPr - insig.
EX31_RS12385 EX31_RS12385 RNase adapter RapZ - sig.
EX31_RS12390 EX31_RS12390 PTS IIA-like nitrogen regulatory protein PtsN - no data
EX31_RS12395 EX31_RS12395 ribosome hibernation promoting factor - cofit
EX31_RS12400 EX31_RS12400 RNA polymerase factor sigma-54 - strong
EX31_RS12405 EX31_RS12405 LPS export ABC transporter ATP-binding protein - no data
EX31_RS12410 EX31_RS12410 lipopolysaccharide ABC transporter substrate-binding protein LptA - no data
EX31_RS12415 EX31_RS12415 LPS export ABC transporter periplasmic protein LptC - insig.
EX31_RS12420 EX31_RS12420 3-deoxy-manno-octulosonate-8-phosphatase KdsC - insig.
EX31_RS12425 EX31_RS12425 arabinose-5-phosphate isomerase KdsD - no data

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