Gene info for CA265_RS11605 in Pedobacter sp. GW460-11-11-14-LB5

Updated annotation (from data): Proline dehydrogenase (EC 1.5.5.2)
Rationale: Specifically important for utilizing L-Proline. Automated validation from mutant phenotype: the predicted function (1.5.5.2) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: proline dehydrogenase
Type 1: Protein-coding gene
Located on scaffold NZ_CP021237, - strand, nucleotides 2,878,659 to 2,879,843
See nucleotide sequence around CA265_RS11605 or for all of scaffold NZ_CP021237

Other databases: NCBI, uniprot: A0A1X9Z5K1

Nearby Genes

500 ntCA265_RS11580 and CA265_RS11585 are separated by 726 nucleotidesCA265_RS11585 and CA265_RS11590 are separated by 430 nucleotidesCA265_RS11590 and CA265_RS11595 are separated by 325 nucleotidesCA265_RS11595 and CA265_RS11600 are separated by 8 nucleotidesCA265_RS11600 and CA265_RS11605 are separated by 438 nucleotidesCA265_RS11605 and CA265_RS11610 are separated by 94 nucleotidesCA265_RS11610 and CA265_RS11615 overlap by 1 nucleotidesCA265_RS11615 and CA265_RS11620 are separated by 1 nucleotidesCA265_RS11620 and CA265_RS11625 are separated by 366 nucleotidesCA265_RS11625 and CA265_RS11630 are separated by 361 nucleotides CA265_RS11580: CA265_RS11580 - cold-shock protein, at 2,872,652 to 2,872,840 _RS11580 CA265_RS11585: CA265_RS11585 - hypothetical protein, at 2,873,567 to 2,873,791 _RS11585 CA265_RS11590: CA265_RS11590 - hypothetical protein, at 2,874,222 to 2,876,930 _RS11590 CA265_RS11595: CA265_RS11595 - haloacid dehalogenase, at 2,877,256 to 2,877,891 _RS11595 CA265_RS11600: CA265_RS11600 - DUF962 domain-containing protein, at 2,877,900 to 2,878,220 _RS11600 CA265_RS11605: CA265_RS11605 - Proline dehydrogenase (EC 1.5.5.2) (from data), at 2,878,659 to 2,879,843 _RS11605 CA265_RS11610: CA265_RS11610 - RNA-binding protein S4, at 2,879,938 to 2,880,144 _RS11610 CA265_RS11615: CA265_RS11615 - 3-dehydroquinate synthase, at 2,880,144 to 2,881,202 _RS11615 CA265_RS11620: CA265_RS11620 - sterol desaturase, at 2,881,204 to 2,882,166 _RS11620 CA265_RS11625: CA265_RS11625 - hypothetical protein, at 2,882,533 to 2,883,150 _RS11625 CA265_RS11630: CA265_RS11630 - prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data), at 2,883,512 to 2,884,345 _RS11630
Locus Name Description Strand Phenotype
CA265_RS11580 CA265_RS11580 cold-shock protein - no data
CA265_RS11585 CA265_RS11585 hypothetical protein - insig.
CA265_RS11590 CA265_RS11590 hypothetical protein + insig.
CA265_RS11595 CA265_RS11595 haloacid dehalogenase + insig.
CA265_RS11600 CA265_RS11600 DUF962 domain-containing protein + insig.
CA265_RS11605 CA265_RS11605 Proline dehydrogenase (EC 1.5.5.2) (from data) - strong
CA265_RS11610 CA265_RS11610 RNA-binding protein S4 + insig.
CA265_RS11615 CA265_RS11615 3-dehydroquinate synthase + no data
CA265_RS11620 CA265_RS11620 sterol desaturase + strong
CA265_RS11625 CA265_RS11625 hypothetical protein + insig.
CA265_RS11630 CA265_RS11630 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) + strong

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