Gene info for CA265_RS05025 in Pedobacter sp. GW460-11-11-14-LB5

Updated annotation (from data): tryptophan synthase, alpha subunit (EC 4.2.1.20)
Rationale: This gene and its ortholog in Echinicola vietnamensis are essential, which is consistent with a role in amino acid biosynthesis. 76% identical to AAFF35_06155, which complements a trpA- strain of E. coli (data of PMID:39375541)
Original annotation: tryptophan synthase subunit alpha
Type 1: Protein-coding gene
Located on scaffold NZ_CP021237, + strand, nucleotides 1,193,036 to 1,193,803
See nucleotide sequence around CA265_RS05025 or for all of scaffold NZ_CP021237

Other databases: NCBI, uniprot: A0A1X9Z1R9

Nearby Genes

500 ntCA265_RS05000 and CA265_RS05005 are separated by 149 nucleotidesCA265_RS05005 and CA265_RS05010 are separated by 286 nucleotidesCA265_RS05010 and CA265_RS05015 overlap by 13 nucleotidesCA265_RS05015 and CA265_RS05020 are separated by 51 nucleotidesCA265_RS05020 and CA265_RS05025 are separated by 106 nucleotidesCA265_RS05025 and CA265_RS05030 are separated by 386 nucleotidesCA265_RS05030 and CA265_RS05035 are separated by 571 nucleotidesCA265_RS05035 and CA265_RS05040 are separated by 70 nucleotidesCA265_RS05040 and CA265_RS05045 are separated by 24 nucleotidesCA265_RS05045 and CA265_RS05050 overlap by 14 nucleotides CA265_RS05000: CA265_RS05000 - esterase, at 1,187,867 to 1,188,706 _RS05000 CA265_RS05005: CA265_RS05005 - ion transporter, at 1,188,856 to 1,189,797 _RS05005 CA265_RS05010: CA265_RS05010 - anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data), at 1,190,084 to 1,191,073 _RS05010 CA265_RS05015: CA265_RS05015 - N-(5'-phosphoribosyl)anthranilate isomerase, at 1,191,061 to 1,191,696 _RS05015 CA265_RS05020: CA265_RS05020 - tryptophan synthase subunit beta, at 1,191,748 to 1,192,929 _RS05020 CA265_RS05025: CA265_RS05025 - tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data), at 1,193,036 to 1,193,803 _RS05025 CA265_RS05030: CA265_RS05030 - GNAT family N-acetyltransferase, at 1,194,190 to 1,194,633 _RS05030 CA265_RS05035: CA265_RS05035 - TetR family transcriptional regulator, at 1,195,205 to 1,195,810 _RS05035 CA265_RS05040: CA265_RS05040 - efflux transporter periplasmic adaptor subunit, at 1,195,881 to 1,197,083 _RS05040 CA265_RS05045: CA265_RS05045 - hydrophobe/amphiphile efflux-1 family RND transporter, at 1,197,108 to 1,200,308 _RS05045 CA265_RS05050: CA265_RS05050 - RND transporter, at 1,200,295 to 1,201,701 _RS05050
Locus Name Description Strand Phenotype
CA265_RS05000 CA265_RS05000 esterase + insig.
CA265_RS05005 CA265_RS05005 ion transporter - insig.
CA265_RS05010 CA265_RS05010 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) + strong
CA265_RS05015 CA265_RS05015 N-(5'-phosphoribosyl)anthranilate isomerase + no data
CA265_RS05020 CA265_RS05020 tryptophan synthase subunit beta + no data
CA265_RS05025 CA265_RS05025 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) + no data
CA265_RS05030 CA265_RS05030 GNAT family N-acetyltransferase - insig.
CA265_RS05035 CA265_RS05035 TetR family transcriptional regulator + strong
CA265_RS05040 CA265_RS05040 efflux transporter periplasmic adaptor subunit + strong
CA265_RS05045 CA265_RS05045 hydrophobe/amphiphile efflux-1 family RND transporter + strong
CA265_RS05050 CA265_RS05050 RND transporter + sig.

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