Gene info for BPHYT_RS34210 in Burkholderia phytofirmans PsJN

Updated annotation (from data): 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-)
Rationale: Specifically important for: L-Fucose; L-Rhamnose monohydrate. The substrate is also known as 2,4-diketo-3-deoxy-L-fuconate, and is an intermediate in both L-rhamnose and L-fucose degradation (SEED_correct)
Original annotation: ureidoglycolate lyase
Type 1: Protein-coding gene
Located on scaffold NC_010676, - strand, nucleotides 3,277,865 to 3,278,713
See nucleotide sequence around BPHYT_RS34210 or for all of scaffold NC_010676

Other databases: NCBI, uniprot: B2T9V2

Nearby Genes

500 ntBPHYT_RS34185 and BPHYT_RS34190 are separated by 112 nucleotidesBPHYT_RS34190 and BPHYT_RS34195 are separated by 269 nucleotidesBPHYT_RS34195 and BPHYT_RS34200 are separated by 120 nucleotidesBPHYT_RS34200 and BPHYT_RS34205 are separated by 58 nucleotidesBPHYT_RS34205 and BPHYT_RS34210 are separated by 105 nucleotidesBPHYT_RS34210 and BPHYT_RS34215 are separated by 66 nucleotidesBPHYT_RS34215 and BPHYT_RS34220 are separated by 44 nucleotidesBPHYT_RS34220 and BPHYT_RS34225 are separated by 7 nucleotidesBPHYT_RS34225 and BPHYT_RS34230 are separated by 105 nucleotidesBPHYT_RS34230 and BPHYT_RS34235 are separated by 66 nucleotides BPHYT_RS34185: BPHYT_RS34185 - cold-shock protein, at 3,273,280 to 3,273,483 _RS34185 BPHYT_RS34190: BPHYT_RS34190 - chemotaxis protein, at 3,273,596 to 3,275,218 _RS34190 BPHYT_RS34195: BPHYT_RS34195 - thioesterase, at 3,275,488 to 3,275,922 _RS34195 BPHYT_RS34200: BPHYT_RS34200 - ArsR family transcriptional regulator, at 3,276,043 to 3,276,345 _RS34200 BPHYT_RS34205: BPHYT_RS34205 - pyridoxal-dependent decarboxylase, at 3,276,404 to 3,277,759 _RS34205 BPHYT_RS34210: BPHYT_RS34210 - 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) (from data), at 3,277,865 to 3,278,713 _RS34210 BPHYT_RS34215: BPHYT_RS34215 - 2-keto-3-deoxy-L-fuconate 4-dehydrogenase FucDH (from data), at 3,278,780 to 3,279,523 _RS34215 BPHYT_RS34220: BPHYT_RS34220 - L-fucono-1,5-lactonase (from data), at 3,279,568 to 3,280,398 _RS34220 BPHYT_RS34225: BPHYT_RS34225 - L-fucose dehydrogenase (EC 1.1.1.122) (from data), at 3,280,406 to 3,281,446 _RS34225 BPHYT_RS34230: BPHYT_RS34230 - L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data), at 3,281,552 to 3,282,847 _RS34230 BPHYT_RS34235: BPHYT_RS34235 - putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data), at 3,282,914 to 3,283,246 _RS34235
Locus Name Description Strand Phenotype
BPHYT_RS34185 BPHYT_RS34185 cold-shock protein + sig.
BPHYT_RS34190 BPHYT_RS34190 chemotaxis protein - insig.
BPHYT_RS34195 BPHYT_RS34195 thioesterase + insig.
BPHYT_RS34200 BPHYT_RS34200 ArsR family transcriptional regulator + insig.
BPHYT_RS34205 BPHYT_RS34205 pyridoxal-dependent decarboxylase + insig.
BPHYT_RS34210 BPHYT_RS34210 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) (from data) - strong
BPHYT_RS34215 BPHYT_RS34215 2-keto-3-deoxy-L-fuconate 4-dehydrogenase FucDH (from data) - strong
BPHYT_RS34220 BPHYT_RS34220 L-fucono-1,5-lactonase (from data) - sig.
BPHYT_RS34225 BPHYT_RS34225 L-fucose dehydrogenase (EC 1.1.1.122) (from data) - strong
BPHYT_RS34230 BPHYT_RS34230 L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) - strong
BPHYT_RS34235 BPHYT_RS34235 putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) - insig.

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