Gene info for BPHYT_RS32825 in Burkholderia phytofirmans PsJN

Updated annotation (from data): Xylose isomerase (EC 5.3.1.5)
Rationale: Specifically important for utilizing D-Xylose. Automated validation from mutant phenotype: the predicted function (XYLISOM-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: xylose isomerase
Type 1: Protein-coding gene
Located on scaffold NC_010676, - strand, nucleotides 2,945,138 to 2,946,460
See nucleotide sequence around BPHYT_RS32825 or for all of scaffold NC_010676

Other databases: NCBI, uniprot: B2T929

Nearby Genes

500 ntBPHYT_RS32800 and BPHYT_RS32805 are separated by 31 nucleotidesBPHYT_RS32805 and BPHYT_RS32810 are separated by 251 nucleotidesBPHYT_RS32810 and BPHYT_RS32815 overlap by 4 nucleotidesBPHYT_RS32815 and BPHYT_RS32820 are separated by 79 nucleotidesBPHYT_RS32820 and BPHYT_RS32825 are separated by 169 nucleotidesBPHYT_RS32825 and BPHYT_RS32830 are separated by 271 nucleotidesBPHYT_RS32830 and BPHYT_RS32835 are separated by 33 nucleotidesBPHYT_RS32835 and BPHYT_RS32840 are separated by 170 nucleotidesBPHYT_RS32840 and BPHYT_RS32845 are separated by 729 nucleotidesBPHYT_RS32845 and BPHYT_RS32850 are separated by 118 nucleotides BPHYT_RS32800: BPHYT_RS32800 - (2Fe-2S)-binding protein, at 2,938,090 to 2,938,551 _RS32800 BPHYT_RS32805: BPHYT_RS32805 - acylaldehyde oxidase, at 2,938,583 to 2,940,853 _RS32805 BPHYT_RS32810: BPHYT_RS32810 - xylose ABC transporter permease, at 2,941,105 to 2,942,304 _RS32810 BPHYT_RS32815: BPHYT_RS32815 - sugar ABC transporter, at 2,942,301 to 2,943,860 _RS32815 BPHYT_RS32820: BPHYT_RS32820 - xylose ABC transporter substrate-binding protein, at 2,943,940 to 2,944,968 _RS32820 BPHYT_RS32825: BPHYT_RS32825 - Xylose isomerase (EC 5.3.1.5) (from data), at 2,945,138 to 2,946,460 _RS32825 BPHYT_RS32830: BPHYT_RS32830 - AraC family transcriptional regulator, at 2,946,732 to 2,947,949 _RS32830 BPHYT_RS32835: BPHYT_RS32835 - aldose 1-epimerase, at 2,947,983 to 2,949,068 _RS32835 BPHYT_RS32840: BPHYT_RS32840 - hypothetical protein, at 2,949,239 to 2,949,541 _RS32840 BPHYT_RS32845: BPHYT_RS32845 - ABC transporter substrate-binding protein, at 2,950,271 to 2,951,389 _RS32845 BPHYT_RS32850: BPHYT_RS32850 - transcriptional regulator, at 2,951,508 to 2,951,870 _RS32850
Locus Name Description Strand Phenotype
BPHYT_RS32800 BPHYT_RS32800 (2Fe-2S)-binding protein - no data
BPHYT_RS32805 BPHYT_RS32805 acylaldehyde oxidase - insig.
BPHYT_RS32810 BPHYT_RS32810 xylose ABC transporter permease - insig.
BPHYT_RS32815 BPHYT_RS32815 sugar ABC transporter - insig.
BPHYT_RS32820 BPHYT_RS32820 xylose ABC transporter substrate-binding protein - strong
BPHYT_RS32825 BPHYT_RS32825 Xylose isomerase (EC 5.3.1.5) (from data) - strong
BPHYT_RS32830 BPHYT_RS32830 AraC family transcriptional regulator + insig.
BPHYT_RS32835 BPHYT_RS32835 aldose 1-epimerase + no data
BPHYT_RS32840 BPHYT_RS32840 hypothetical protein + no data
BPHYT_RS32845 BPHYT_RS32845 ABC transporter substrate-binding protein + insig.
BPHYT_RS32850 BPHYT_RS32850 transcriptional regulator + insig.

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