Gene info for BPHYT_RS28235 in Burkholderia phytofirmans PsJN

Updated annotation (from data): L-rhamnose-1-dehydrogenase ( EC 1.1.1.173)
Rationale: Specifically important in carbon source L-Rhamnose monohydrate. This is the first step in its catabolism.
Original annotation: short-chain dehydrogenase
Type 1: Protein-coding gene
Located on scaffold NC_010676, - strand, nucleotides 1,892,111 to 1,892,893
See nucleotide sequence around BPHYT_RS28235 or for all of scaffold NC_010676

Other databases: NCBI, uniprot: B2TFM6

Nearby Genes

500 ntBPHYT_RS28210 and BPHYT_RS28215 overlap by 4 nucleotidesBPHYT_RS28215 and BPHYT_RS28220 are separated by 17 nucleotidesBPHYT_RS28220 and BPHYT_RS28225 are separated by 67 nucleotidesBPHYT_RS28225 and BPHYT_RS28230 are separated by 139 nucleotidesBPHYT_RS28230 and BPHYT_RS28235 are separated by 16 nucleotidesBPHYT_RS28235 and BPHYT_RS28240 are separated by 45 nucleotidesBPHYT_RS28240 and BPHYT_RS28245 are separated by 36 nucleotidesBPHYT_RS28245 and BPHYT_RS28250 are separated by 97 nucleotidesBPHYT_RS28250 and BPHYT_RS28255 are separated by 491 nucleotidesBPHYT_RS28255 and BPHYT_RS28260 are separated by 120 nucleotides BPHYT_RS28210: BPHYT_RS28210 - ATPase, at 1,887,061 to 1,888,119 _RS28210 BPHYT_RS28215: BPHYT_RS28215 - D-ribose transporter ATP binding protein, at 1,888,116 to 1,889,645 _RS28215 BPHYT_RS28220: BPHYT_RS28220 - amidohydrolase, at 1,889,663 to 1,890,556 _RS28220 BPHYT_RS28225: BPHYT_RS28225 - L-rhamnose mutarotase, at 1,890,624 to 1,890,947 _RS28225 BPHYT_RS28230: BPHYT_RS28230 - LysR family transcriptional regulator, at 1,891,087 to 1,892,094 _RS28230 BPHYT_RS28235: BPHYT_RS28235 - L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) (from data), at 1,892,111 to 1,892,893 _RS28235 BPHYT_RS28240: BPHYT_RS28240 - L-rhamnonate dehydratase, at 1,892,939 to 1,894,117 _RS28240 BPHYT_RS28245: BPHYT_RS28245 - MFS transporter, at 1,894,154 to 1,895,482 _RS28245 BPHYT_RS28250: BPHYT_RS28250 - 3-oxoacyl-ACP reductase, at 1,895,580 to 1,896,332 _RS28250 BPHYT_RS28255: BPHYT_RS28255 - hypothetical protein, at 1,896,824 to 1,897,033 _RS28255 BPHYT_RS28260: BPHYT_RS28260 - oxidoreductase, at 1,897,154 to 1,897,852 _RS28260
Locus Name Description Strand Phenotype
BPHYT_RS28210 BPHYT_RS28210 ATPase - no data
BPHYT_RS28215 BPHYT_RS28215 D-ribose transporter ATP binding protein - insig.
BPHYT_RS28220 BPHYT_RS28220 amidohydrolase - no data
BPHYT_RS28225 BPHYT_RS28225 L-rhamnose mutarotase - no data
BPHYT_RS28230 BPHYT_RS28230 LysR family transcriptional regulator + no data
BPHYT_RS28235 BPHYT_RS28235 L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) (from data) - strong
BPHYT_RS28240 BPHYT_RS28240 L-rhamnonate dehydratase - insig.
BPHYT_RS28245 BPHYT_RS28245 MFS transporter - strong
BPHYT_RS28250 BPHYT_RS28250 3-oxoacyl-ACP reductase - no data
BPHYT_RS28255 BPHYT_RS28255 hypothetical protein + insig.
BPHYT_RS28260 BPHYT_RS28260 oxidoreductase + insig.

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