Gene info for BPHYT_RS22380 in Burkholderia phytofirmans PsJN

Updated annotation (from data): Carnitine 3-dehydrogenase (EC 1.1.1.108)
Rationale: Specifically important for utilizing Carnitine Hydrochloride. Automated validation from mutant phenotype: the predicted function (CARNITINE-3-DEHYDROGENASE-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: 3-hydroxybutyryl-CoA dehydrogenase
Type 1: Protein-coding gene
Located on scaffold NC_010676, - strand, nucleotides 577,184 to 578,149
See nucleotide sequence around BPHYT_RS22380 or for all of scaffold NC_010676

Other databases: NCBI, uniprot: B2TDY4

Nearby Genes

500 ntBPHYT_RS22355 and BPHYT_RS22360 are separated by 352 nucleotidesBPHYT_RS22360 and BPHYT_RS22365 are separated by 24 nucleotidesBPHYT_RS22365 and BPHYT_RS22370 are separated by 75 nucleotidesBPHYT_RS22370 and BPHYT_RS22375 overlap by 8 nucleotidesBPHYT_RS22375 and BPHYT_RS22380 are separated by 229 nucleotidesBPHYT_RS22380 and BPHYT_RS22385 are separated by 63 nucleotidesBPHYT_RS22385 and BPHYT_RS22390 are separated by 41 nucleotidesBPHYT_RS22390 and BPHYT_RS22395 are separated by 347 nucleotidesBPHYT_RS22395 and BPHYT_RS22400 are separated by 181 nucleotidesBPHYT_RS22400 and BPHYT_RS22405 are separated by 57 nucleotides BPHYT_RS22355: BPHYT_RS22355 - HAD family hydrolase, at 571,955 to 572,629 _RS22355 BPHYT_RS22360: BPHYT_RS22360 - response regulator receiver, at 572,982 to 573,944 _RS22360 BPHYT_RS22365: BPHYT_RS22365 - membrane protein, at 573,969 to 575,411 _RS22365 BPHYT_RS22370: BPHYT_RS22370 - alpha/beta hydrolase, at 575,487 to 576,452 _RS22370 BPHYT_RS22375: BPHYT_RS22375 - 4-hydroxybenzoyl-CoA thioesterase, at 576,445 to 576,954 _RS22375 BPHYT_RS22380: BPHYT_RS22380 - Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data), at 577,184 to 578,149 _RS22380 BPHYT_RS22385: BPHYT_RS22385 - hypothetical protein, at 578,213 to 579,142 _RS22385 BPHYT_RS22390: BPHYT_RS22390 - glycine/betaine ABC transporter substrate-binding protein, at 579,184 to 580,149 _RS22390 BPHYT_RS22395: BPHYT_RS22395 - AraC family transcriptional regulator, at 580,497 to 581,450 _RS22395 BPHYT_RS22400: BPHYT_RS22400 - hypothetical protein, at 581,632 to 581,958 _RS22400 BPHYT_RS22405: BPHYT_RS22405 - HxlR family transcriptional regulator, at 582,016 to 582,417 _RS22405
Locus Name Description Strand Phenotype
BPHYT_RS22355 BPHYT_RS22355 HAD family hydrolase + insig.
BPHYT_RS22360 BPHYT_RS22360 response regulator receiver + sig.
BPHYT_RS22365 BPHYT_RS22365 membrane protein + insig.
BPHYT_RS22370 BPHYT_RS22370 alpha/beta hydrolase - insig.
BPHYT_RS22375 BPHYT_RS22375 4-hydroxybenzoyl-CoA thioesterase - strong
BPHYT_RS22380 BPHYT_RS22380 Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) - strong
BPHYT_RS22385 BPHYT_RS22385 hypothetical protein - strong
BPHYT_RS22390 BPHYT_RS22390 glycine/betaine ABC transporter substrate-binding protein - strong
BPHYT_RS22395 BPHYT_RS22395 AraC family transcriptional regulator + strong
BPHYT_RS22400 BPHYT_RS22400 hypothetical protein + strong
BPHYT_RS22405 BPHYT_RS22405 HxlR family transcriptional regulator - no data

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