Gene info for BPHYT_RS19340 in Burkholderia phytofirmans PsJN

Updated annotation (from data): L-serine ammonia-lyase (EC 4.3.1.17)
Rationale: Specifically important for utilizing L-Serine. Automated validation from mutant phenotype: the predicted function (4.3.1.17) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: serine dehydratase
Type 1: Protein-coding gene
Located on scaffold NC_010681, + strand, nucleotides 4,344,188 to 4,345,576
See nucleotide sequence around BPHYT_RS19340 or for all of scaffold NC_010681

Other databases: NCBI, uniprot: B2T7J0

Nearby Genes

500 ntBPHYT_RS19315 and BPHYT_RS19320 are separated by 524 nucleotidesBPHYT_RS19320 and BPHYT_RS19325 are separated by 63 nucleotidesBPHYT_RS19325 and BPHYT_RS19330 are separated by 81 nucleotidesBPHYT_RS19330 and BPHYT_RS19335 are separated by 139 nucleotidesBPHYT_RS19335 and BPHYT_RS19340 are separated by 30 nucleotidesBPHYT_RS19340 and BPHYT_RS19345 are separated by 219 nucleotidesBPHYT_RS19345 and BPHYT_RS19350 are separated by 144 nucleotidesBPHYT_RS19350 and BPHYT_RS19355 are separated by 88 nucleotidesBPHYT_RS19355 and BPHYT_RS19360 are separated by 736 nucleotidesBPHYT_RS19360 and BPHYT_RS19365 are separated by 474 nucleotides BPHYT_RS19315: BPHYT_RS19315 - hypothetical protein, at 4,337,432 to 4,337,782 _RS19315 BPHYT_RS19320: BPHYT_RS19320 - glycine cleavage system protein T, at 4,338,307 to 4,339,425 _RS19320 BPHYT_RS19325: BPHYT_RS19325 - glycine cleavage system H protein, at 4,339,489 to 4,339,869 _RS19325 BPHYT_RS19330: BPHYT_RS19330 - glycine cleavage system P protein (EC 1.4.4.2) (from data), at 4,339,951 to 4,342,887 _RS19330 BPHYT_RS19335: BPHYT_RS19335 - hypothetical protein, at 4,343,027 to 4,344,157 _RS19335 BPHYT_RS19340: BPHYT_RS19340 - L-serine ammonia-lyase (EC 4.3.1.17) (from data), at 4,344,188 to 4,345,576 _RS19340 BPHYT_RS19345: BPHYT_RS19345 - thiamine pyrophosphate protein, at 4,345,796 to 4,347,514 _RS19345 BPHYT_RS19350: BPHYT_RS19350 - amino acid ABC transporter substrate-binding protein, at 4,347,659 to 4,348,807 _RS19350 BPHYT_RS19355: BPHYT_RS19355 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase, at 4,348,896 to 4,352,825 _RS19355 BPHYT_RS19360: BPHYT_RS19360 - primosome assembly protein PriA, at 4,353,562 to 4,355,799 _RS19360 BPHYT_RS19365: BPHYT_RS19365 - uroporphyrinogen decarboxylase, at 4,356,274 to 4,357,374 _RS19365
Locus Name Description Strand Phenotype
BPHYT_RS19315 BPHYT_RS19315 hypothetical protein + insig.
BPHYT_RS19320 BPHYT_RS19320 glycine cleavage system protein T + strong
BPHYT_RS19325 BPHYT_RS19325 glycine cleavage system H protein + insig.
BPHYT_RS19330 BPHYT_RS19330 glycine cleavage system P protein (EC 1.4.4.2) (from data) + sig.
BPHYT_RS19335 BPHYT_RS19335 hypothetical protein + sig.
BPHYT_RS19340 BPHYT_RS19340 L-serine ammonia-lyase (EC 4.3.1.17) (from data) + strong
BPHYT_RS19345 BPHYT_RS19345 thiamine pyrophosphate protein + insig.
BPHYT_RS19350 BPHYT_RS19350 amino acid ABC transporter substrate-binding protein - strong
BPHYT_RS19355 BPHYT_RS19355 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase - strong
BPHYT_RS19360 BPHYT_RS19360 primosome assembly protein PriA - no data
BPHYT_RS19365 BPHYT_RS19365 uroporphyrinogen decarboxylase - no data

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