Gene info for BPHYT_RS17340 in Burkholderia phytofirmans PsJN

Updated annotation (from data): 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91)
Rationale: Specifically important for utilization of phenylalanine and phenylacetate. This dehydrogenase (also known as PaaZ) is part of the aerobic phenylacetyl-CoA degradation pathway. 86% identical to BCAL0408 from B. cenocepacia, which is also involved in phenylacetate degradation and was proposed to be PaaZ (PMC2580687).
Original annotation: aldehyde dehydrogenase
Type 1: Protein-coding gene
Located on scaffold NC_010681, + strand, nucleotides 3,930,706 to 3,932,406
See nucleotide sequence around BPHYT_RS17340 or for all of scaffold NC_010681

Other databases: NCBI, uniprot: B2SYZ1

Nearby Genes

500 ntBPHYT_RS17315 and BPHYT_RS17320 are separated by 314 nucleotidesBPHYT_RS17320 and BPHYT_RS17325 are separated by 68 nucleotidesBPHYT_RS17325 and BPHYT_RS17330 are separated by 17 nucleotidesBPHYT_RS17330 and BPHYT_RS17335 are separated by 508 nucleotidesBPHYT_RS17335 and BPHYT_RS17340 are separated by 137 nucleotidesBPHYT_RS17340 and BPHYT_RS17345 are separated by 125 nucleotidesBPHYT_RS17345 and BPHYT_RS17350 are separated by 50 nucleotidesBPHYT_RS17350 and BPHYT_RS17355 are separated by 2 nucleotidesBPHYT_RS17355 and BPHYT_RS17360 are separated by 150 nucleotidesBPHYT_RS17360 and BPHYT_RS17365 are separated by 177 nucleotides BPHYT_RS17315: BPHYT_RS17315 - 23S ribosomal RNA, at 3,924,234 to 3,927,136 _RS17315 BPHYT_RS17320: BPHYT_RS17320 - tRNA-Ala, at 3,927,451 to 3,927,526 _RS17320 BPHYT_RS17325: BPHYT_RS17325 - tRNA-Ile, at 3,927,595 to 3,927,671 _RS17325 BPHYT_RS17330: BPHYT_RS17330 - 16S ribosomal RNA, at 3,927,689 to 3,929,283 _RS17330 BPHYT_RS17335: BPHYT_RS17335 - 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data), at 3,929,792 to 3,930,568 _RS17335 BPHYT_RS17340: BPHYT_RS17340 - 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data), at 3,930,706 to 3,932,406 _RS17340 BPHYT_RS17345: BPHYT_RS17345 - bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data), at 3,932,532 to 3,933,734 _RS17345 BPHYT_RS17350: BPHYT_RS17350 - enoyl-CoA hydratase, at 3,933,785 to 3,934,576 _RS17350 BPHYT_RS17355: BPHYT_RS17355 - phenylacetic acid degradation protein, at 3,934,579 to 3,935,040 _RS17355 BPHYT_RS17360: BPHYT_RS17360 - phenylacetate-CoA ligase, at 3,935,191 to 3,936,495 _RS17360 BPHYT_RS17365: BPHYT_RS17365 - transglycosylase, at 3,936,673 to 3,937,797 _RS17365
Locus Name Description Strand Phenotype
BPHYT_RS17315 BPHYT_RS17315 23S ribosomal RNA - no data
BPHYT_RS17320 BPHYT_RS17320 tRNA-Ala - no data
BPHYT_RS17325 BPHYT_RS17325 tRNA-Ile - no data
BPHYT_RS17330 BPHYT_RS17330 16S ribosomal RNA - no data
BPHYT_RS17335 BPHYT_RS17335 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data) - strong
BPHYT_RS17340 BPHYT_RS17340 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) + strong
BPHYT_RS17345 BPHYT_RS17345 bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data) + strong
BPHYT_RS17350 BPHYT_RS17350 enoyl-CoA hydratase + no data
BPHYT_RS17355 BPHYT_RS17355 phenylacetic acid degradation protein + strong
BPHYT_RS17360 BPHYT_RS17360 phenylacetate-CoA ligase + strong
BPHYT_RS17365 BPHYT_RS17365 transglycosylase - no data

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