Gene info for BPHYT_RS02745 in Burkholderia phytofirmans PsJN

Updated annotation (from data): N-acetylglucosamine-specific PTS system, IIBC components (nagE)
Rationale: Specifically important on NAG and cofit with the I-HPr-IIA component nearby (BPHYT_RS02740). CDD or PFam do not show any sign of this gene containing a IIA component, so the SEED annotation is misleading. 62% similar to H16_A0312 (nagE) and 58% similar to PA3761, which are both involved in NAG utilization (PMCid:PMC3127587, PMCid:PMC2542419). KEGG_correct.
Original annotation: PTS system N-acetylglucosamine-specific transporter subunit IIBC
Type 1: Protein-coding gene
Located on scaffold NC_010681, + strand, nucleotides 616,295 to 618,070
See nucleotide sequence around BPHYT_RS02745 or for all of scaffold NC_010681

Other databases: NCBI, uniprot: B2SXE4

Nearby Genes

500 ntBPHYT_RS02720 and BPHYT_RS02725 are separated by 371 nucleotidesBPHYT_RS02725 and BPHYT_RS02730 are separated by 101 nucleotidesBPHYT_RS02730 and BPHYT_RS02735 overlap by 8 nucleotidesBPHYT_RS02735 and BPHYT_RS02740 are separated by 38 nucleotidesBPHYT_RS02740 and BPHYT_RS02745 are separated by 109 nucleotidesBPHYT_RS02745 and BPHYT_RS02750 are separated by 255 nucleotidesBPHYT_RS02750 and BPHYT_RS02755 are separated by 92 nucleotidesBPHYT_RS02755 and BPHYT_RS02760 are separated by 28 nucleotidesBPHYT_RS02760 and BPHYT_RS02765 are separated by 35 nucleotidesBPHYT_RS02765 and BPHYT_RS02770 overlap by 11 nucleotides BPHYT_RS02720: BPHYT_RS02720 - MarR family transcriptional regulator, at 609,345 to 610,271 _RS02720 BPHYT_RS02725: BPHYT_RS02725 - GntR family transcriptional regulator, at 610,643 to 611,377 _RS02725 BPHYT_RS02730: BPHYT_RS02730 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data), at 611,479 to 612,582 _RS02730 BPHYT_RS02735: BPHYT_RS02735 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data), at 612,575 to 613,582 _RS02735 BPHYT_RS02740: BPHYT_RS02740 - N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data), at 613,621 to 616,185 _RS02740 BPHYT_RS02745: BPHYT_RS02745 - N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data), at 616,295 to 618,070 _RS02745 BPHYT_RS02750: BPHYT_RS02750 - hypothetical protein, at 618,326 to 619,651 _RS02750 BPHYT_RS02755: BPHYT_RS02755 - cyd operon protein YbgT, at 619,744 to 619,857 _RS02755 BPHYT_RS02760: BPHYT_RS02760 - cytochrome BD oxidase subunit II, at 619,886 to 621,022 _RS02760 BPHYT_RS02765: BPHYT_RS02765 - cytochrome BD oxidase subunit I, at 621,058 to 622,650 _RS02765 BPHYT_RS02770: BPHYT_RS02770 - membrane protein, at 622,640 to 622,900 _RS02770
Locus Name Description Strand Phenotype
BPHYT_RS02720 BPHYT_RS02720 MarR family transcriptional regulator - insig.
BPHYT_RS02725 BPHYT_RS02725 GntR family transcriptional regulator + sig.
BPHYT_RS02730 BPHYT_RS02730 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) + strong
BPHYT_RS02735 BPHYT_RS02735 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) + strong
BPHYT_RS02740 BPHYT_RS02740 N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data) + strong
BPHYT_RS02745 BPHYT_RS02745 N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) + strong
BPHYT_RS02750 BPHYT_RS02750 hypothetical protein + insig.
BPHYT_RS02755 BPHYT_RS02755 cyd operon protein YbgT - insig.
BPHYT_RS02760 BPHYT_RS02760 cytochrome BD oxidase subunit II - sig.
BPHYT_RS02765 BPHYT_RS02765 cytochrome BD oxidase subunit I - strong
BPHYT_RS02770 BPHYT_RS02770 membrane protein - strong

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