Gene info for AO356_13845 in Pseudomonas fluorescens FW300-N2C3

Updated annotation (from data): Carnitine 3-dehydrogenase (EC 1.1.1.108)
Rationale: Specifically important for utilizing Carnitine Hydrochloride. Automated validation from mutant phenotype: the predicted function (CARNITINE-3-DEHYDROGENASE-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: 3-hydroxybutyryl-CoA dehydrogenase
Type 1: Protein-coding gene
Located on scaffold CP012831, - strand, nucleotides 3,141,739 to 3,142,704
See nucleotide sequence around AO356_13845 or for all of scaffold CP012831

Other databases: NCBI, uniprot: A0A0N9W8F7

Nearby Genes

500 ntAO356_13820 and AO356_13825 are separated by 617 nucleotidesAO356_13825 and AO356_13830 are separated by 118 nucleotidesAO356_13830 and AO356_13835 are separated by 382 nucleotidesAO356_13835 and AO356_13840 are separated by 19 nucleotidesAO356_13840 and AO356_13845 are separated by 163 nucleotidesAO356_13845 and AO356_13850 are separated by 162 nucleotidesAO356_13850 and AO356_13855 are separated by 71 nucleotidesAO356_13855 and AO356_13860 are separated by 192 nucleotidesAO356_13860 and AO356_13865 are separated by 68 nucleotidesAO356_13865 and AO356_13870 are separated by 205 nucleotides AO356_13820: AO356_13820 - serine dehydratase, at 3,136,054 to 3,137,430 _13820 AO356_13825: AO356_13825 - AraC family transcriptional regulator, at 3,138,048 to 3,139,151 _13825 AO356_13830: AO356_13830 - hypothetical protein, at 3,139,270 to 3,139,533 _13830 AO356_13835: AO356_13835 - gamma-butyrobetaine dioxygenase, at 3,139,916 to 3,141,079 _13835 AO356_13840: AO356_13840 - L-carnitine 3-dehydrogenase, thioesterase-like subunit CdhB (EC 1.1.1.108) (from data), at 3,141,099 to 3,141,575 _13840 AO356_13845: AO356_13845 - Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data), at 3,141,739 to 3,142,704 _13845 AO356_13850: AO356_13850 - NADPH:quinone reductase, at 3,142,867 to 3,143,754 _13850 AO356_13855: AO356_13855 - glycine/betaine ABC transporter substrate-binding protein, at 3,143,826 to 3,144,770 _13855 AO356_13860: AO356_13860 - AraC family transcriptional regulator, at 3,144,963 to 3,145,922 _13860 AO356_13865: AO356_13865 - hypothetical protein, at 3,145,991 to 3,147,166 _13865 AO356_13870: AO356_13870 - hypothetical protein, at 3,147,372 to 3,147,788 _13870
Locus Name Description Strand Phenotype
AO356_13820 AO356_13820 serine dehydratase + sig.
AO356_13825 AO356_13825 AraC family transcriptional regulator + strong
AO356_13830 AO356_13830 hypothetical protein - insig.
AO356_13835 AO356_13835 gamma-butyrobetaine dioxygenase - insig.
AO356_13840 AO356_13840 L-carnitine 3-dehydrogenase, thioesterase-like subunit CdhB (EC 1.1.1.108) (from data) - strong
AO356_13845 AO356_13845 Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) - strong
AO356_13850 AO356_13850 NADPH:quinone reductase - strong
AO356_13855 AO356_13855 glycine/betaine ABC transporter substrate-binding protein - strong
AO356_13860 AO356_13860 AraC family transcriptional regulator + strong
AO356_13865 AO356_13865 hypothetical protein + insig.
AO356_13870 AO356_13870 hypothetical protein - insig.

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