Gene info for DvMF_1464 in Desulfovibrio vulgaris Miyazaki F

Updated annotation (from data): Homocysteine formation from aspartate semialdehyde (DUF39 component)
Rationale: Mutants in all three genes of this putative system are rescued by casamino acids or methionine but not by threonine. We propose that these three genes act together to enable the formation of homocysteine from asparate semialdehyde (the pathway proposed by Allen et al 2015 (PMID:25938369)). (auxotroph)
Original annotation: protein of unknown function DUF39 (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 254340, + strand, nucleotides 1,794,909 to 1,796,081
See nucleotide sequence around DvMF_1464 or for all of scaffold 254340

Other databases: MicrobesOnline, NCBI, IMG: 643539976, uniprot: B8DLN6

Nearby Genes

500 ntDvMF_1459 and DvMF_1460 are separated by 62 nucleotidesDvMF_1460 and DvMF_1461 are separated by 32 nucleotidesDvMF_1461 and DvMF_1462 are separated by 108 nucleotidesDvMF_1462 and DvMF_1463 are separated by 371 nucleotidesDvMF_1463 and DvMF_1464 are separated by 165 nucleotidesDvMF_1464 and DvMF_1465 are separated by 586 nucleotidesDvMF_1465 and DvMF_1466 are separated by 257 nucleotidesDvMF_1466 and DvMF_1467 are separated by 369 nucleotidesDvMF_1467 and DvMF_1468 are separated by 256 nucleotidesDvMF_1468 and DvMF_1469 are separated by 110 nucleotides DvMF_1459: DvMF_1459 - domain of unknown function DUF1731 (RefSeq), at 1,788,198 to 1,789,154 _1459 DvMF_1460: DvMF_1460 - putative PAS/PAC sensor protein (RefSeq), at 1,789,217 to 1,790,641 _1460 DvMF_1461: DvMF_1461 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,790,674 to 1,792,149 _1461 DvMF_1462: DvMF_1462 - phosphoglycerate mutase 1 family (RefSeq), at 1,792,258 to 1,793,007 _1462 DvMF_1463: DvMF_1463 - response regulator receiver protein (RefSeq), at 1,793,379 to 1,794,743 _1463 DvMF_1464: DvMF_1464 - Homocysteine formation from aspartate semialdehyde (DUF39 component) (from data), at 1,794,909 to 1,796,081 _1464 DvMF_1465: DvMF_1465 - hypothetical protein (RefSeq), at 1,796,668 to 1,797,522 _1465 DvMF_1466: DvMF_1466 - hypothetical protein (RefSeq), at 1,797,780 to 1,797,890 _1466 DvMF_1467: DvMF_1467 - regulatory protein, FmdB family (RefSeq), at 1,798,260 to 1,798,676 _1467 DvMF_1468: DvMF_1468 - adenylosuccinate lyase (RefSeq), at 1,798,933 to 1,800,231 _1468 DvMF_1469: DvMF_1469 - orotate phosphoribosyltransferase (RefSeq), at 1,800,342 to 1,800,902 _1469
Locus Name Description Strand Phenotype
DvMF_1459 DvMF_1459 domain of unknown function DUF1731 (RefSeq) + insig.
DvMF_1460 DvMF_1460 putative PAS/PAC sensor protein (RefSeq) + cofit
DvMF_1461 DvMF_1461 two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) + no data
DvMF_1462 DvMF_1462 phosphoglycerate mutase 1 family (RefSeq) + insig.
DvMF_1463 DvMF_1463 response regulator receiver protein (RefSeq) + insig.
DvMF_1464 DvMF_1464 Homocysteine formation from aspartate semialdehyde (DUF39 component) (from data) + strong
DvMF_1465 DvMF_1465 hypothetical protein (RefSeq) + insig.
DvMF_1466 DvMF_1466 hypothetical protein (RefSeq) + no data
DvMF_1467 DvMF_1467 regulatory protein, FmdB family (RefSeq) + sig.
DvMF_1468 DvMF_1468 adenylosuccinate lyase (RefSeq) + no data
DvMF_1469 DvMF_1469 orotate phosphoribosyltransferase (RefSeq) + cofit

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