Gene info for DvMF_0262 in Desulfovibrio vulgaris Miyazaki F

Updated annotation (from data): Homocysteine formation from aspartate semialdehyde (NIL/ferredoxin component)
Rationale: Mutants in all three genes of this putative system are rescued by casamino acids or methionine but not by threonine. We propose that these three genes act together to enable the formation of homocysteine from asparate semialdehyde (the pathway proposed by Allen et al 2015 (PMID:25938369)). (auxotroph)
Original annotation: 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 254340, - strand, nucleotides 300,268 to 300,711
See nucleotide sequence around DvMF_0262 or for all of scaffold 254340

Other databases: MicrobesOnline, NCBI, IMG: 643538758, uniprot: B8DPD2

Nearby Genes

500 ntDvMF_0258 and DvMF_0259 are separated by 18 nucleotidesDvMF_0259 and DvMF_R0015 are separated by 190 nucleotidesDvMF_R0015 and DvMF_0260 are separated by 120 nucleotidesDvMF_0260 and DvMF_0261 are separated by 279 nucleotidesDvMF_0261 and DvMF_0262 are separated by 501 nucleotidesDvMF_0262 and DvMF_0263 are separated by 33 nucleotidesDvMF_0263 and DvMF_0264 are separated by 98 nucleotidesDvMF_0264 and DvMF_0265 are separated by 28 nucleotidesDvMF_0265 and ileS are separated by 117 nucleotidesileS and DvMF_0267 are separated by 365 nucleotides DvMF_0258: DvMF_0258 - protein of unknown function DUF164 (RefSeq), at 295,595 to 296,344 _0258 DvMF_0259: DvMF_0259 - protein of unknown function DUF34 (RefSeq), at 296,363 to 297,397 _0259 DvMF_R0015: DvMF_R0015 - tRNA-Met (RefSeq), at 297,588 to 297,663 _R0015 DvMF_0260: DvMF_0260 - Thioredoxin-disulfide reductase (RefSeq), at 297,784 to 298,740 _0260 DvMF_0261: DvMF_0261 - putative chemotaxis phosphatase, CheZ (RefSeq), at 299,020 to 299,766 _0261 DvMF_0262: DvMF_0262 - Homocysteine formation from aspartate semialdehyde (NIL/ferredoxin component) (from data), at 300,268 to 300,711 _0262 DvMF_0263: DvMF_0263 - tol-pal system protein YbgF (RefSeq), at 300,745 to 301,746 _0263 DvMF_0264: DvMF_0264 - hypothetical protein (RefSeq), at 301,845 to 302,039 _0264 DvMF_0265: DvMF_0265 - lipoprotein signal peptidase (RefSeq), at 302,068 to 302,568 _0265 DvMF_0266: ileS - isoleucyl-tRNA synthetase (RefSeq), at 302,686 to 305,502 ileS DvMF_0267: DvMF_0267 - lipolytic protein G-D-S-L family (RefSeq), at 305,868 to 306,515 _0267
Locus Name Description Strand Phenotype
DvMF_0258 DvMF_0258 protein of unknown function DUF164 (RefSeq) - no data
DvMF_0259 DvMF_0259 protein of unknown function DUF34 (RefSeq) - strong
DvMF_R0015 DvMF_R0015 tRNA-Met (RefSeq) - no data
DvMF_0260 DvMF_0260 Thioredoxin-disulfide reductase (RefSeq) - insig.
DvMF_0261 DvMF_0261 putative chemotaxis phosphatase, CheZ (RefSeq) - insig.
DvMF_0262 DvMF_0262 Homocysteine formation from aspartate semialdehyde (NIL/ferredoxin component) (from data) - strong
DvMF_0263 DvMF_0263 tol-pal system protein YbgF (RefSeq) - no data
DvMF_0264 DvMF_0264 hypothetical protein (RefSeq) - no data
DvMF_0265 DvMF_0265 lipoprotein signal peptidase (RefSeq) - no data
DvMF_0266 ileS isoleucyl-tRNA synthetase (RefSeq) - no data
DvMF_0267 DvMF_0267 lipolytic protein G-D-S-L family (RefSeq) - insig.

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