Gene info for DvMF_0044 in Desulfovibrio vulgaris Miyazaki F

Updated annotation (from data): Homocysteine formation from aspartate semialdehyde (COG2122 or apbE like component)
Rationale: Mutants in all three genes of this putative system are rescued by casamino acids or methionine but not by threonine. We propose that these three genes act together to enable the formation of homocysteine from asparate semialdehyde (the pathway proposed by Allen et al 2015 (PMID:25938369)). (auxotroph)
Original annotation: hypothetical protein (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 254340, - strand, nucleotides 59,166 to 59,999
See nucleotide sequence around DvMF_0044 or for all of scaffold 254340

Other databases: MicrobesOnline, NCBI, IMG: 643538536, uniprot: B8DN61

Nearby Genes

500 ntDvMF_0040 and DvMF_0041 are separated by 143 nucleotidesDvMF_0041 and DvMF_0042 are separated by 86 nucleotidesDvMF_0042 and DvMF_R0006 are separated by 1724 nucleotidesDvMF_R0006 and DvMF_0043 are separated by 404 nucleotidesDvMF_0043 and DvMF_0044 are separated by 106 nucleotidesDvMF_0044 and DvMF_0045 are separated by 152 nucleotidesDvMF_0045 and DvMF_0046 are separated by 292 nucleotidesDvMF_0046 and DvMF_0047 are separated by 68 nucleotidesDvMF_0047 and DvMF_0048 are separated by 162 nucleotidesDvMF_0048 and DvMF_0049 are separated by 264 nucleotides DvMF_0040: DvMF_0040 - Mammalian cell entry related domain protein (RefSeq), at 52,319 to 53,302 _0040 DvMF_0041: DvMF_0041 - protein of unknown function DUF330 (RefSeq), at 53,446 to 54,039 _0041 DvMF_0042: DvMF_0042 - diguanylate cyclase (RefSeq), at 54,126 to 55,274 _0042 DvMF_R0006: DvMF_R0006 - tRNA-Thr (RefSeq), at 56,999 to 57,074 _R0006 DvMF_0043: DvMF_0043 - hypothetical protein (RefSeq), at 57,479 to 59,059 _0043 DvMF_0044: DvMF_0044 - Homocysteine formation from aspartate semialdehyde (COG2122 or apbE like component) (from data), at 59,166 to 59,999 _0044 DvMF_0045: DvMF_0045 - Endonuclease/exonuclease/phosphatase (RefSeq), at 60,152 to 61,366 _0045 DvMF_0046: DvMF_0046 - ornithine carbamoyltransferase (RefSeq), at 61,659 to 62,561 _0046 DvMF_0047: DvMF_0047 - argininosuccinate synthase (RefSeq), at 62,630 to 63,835 _0047 DvMF_0048: DvMF_0048 - argininosuccinate lyase (RefSeq), at 63,998 to 65,380 _0048 DvMF_0049: DvMF_0049 - hypothetical protein (RefSeq), at 65,645 to 66,274 _0049
Locus Name Description Strand Phenotype
DvMF_0040 DvMF_0040 Mammalian cell entry related domain protein (RefSeq) + insig.
DvMF_0041 DvMF_0041 protein of unknown function DUF330 (RefSeq) + insig.
DvMF_0042 DvMF_0042 diguanylate cyclase (RefSeq) + insig.
DvMF_R0006 DvMF_R0006 tRNA-Thr (RefSeq) - no data
DvMF_0043 DvMF_0043 hypothetical protein (RefSeq) + insig.
DvMF_0044 DvMF_0044 Homocysteine formation from aspartate semialdehyde (COG2122 or apbE like component) (from data) - strong
DvMF_0045 DvMF_0045 Endonuclease/exonuclease/phosphatase (RefSeq) + insig.
DvMF_0046 DvMF_0046 ornithine carbamoyltransferase (RefSeq) + strong
DvMF_0047 DvMF_0047 argininosuccinate synthase (RefSeq) + strong
DvMF_0048 DvMF_0048 argininosuccinate lyase (RefSeq) + strong
DvMF_0049 DvMF_0049 hypothetical protein (RefSeq) + insig.

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