Gene info for DvMF_0011 in Desulfovibrio vulgaris Miyazaki F

Updated annotation (from data): L-serine ammonia-lyase (EC 4.3.1.17)
Rationale: Specifically important for utilizing L-Serine. Automated validation from mutant phenotype: the predicted function (4.3.1.17) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: serine dehydratase alpha chain (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 254340, + strand, nucleotides 14,550 to 15,929
See nucleotide sequence around DvMF_0011 or for all of scaffold 254340

Other databases: MicrobesOnline, NCBI, IMG: 643538503, uniprot: B8DN29

Nearby Genes

500 ntDvMF_R0004 and DvMF_R0005 are separated by 13 nucleotidesDvMF_R0005 and DvMF_0008 are separated by 475 nucleotidesDvMF_0008 and DvMF_0009 are separated by 205 nucleotidesDvMF_0009 and DvMF_0010 are separated by 164 nucleotidesDvMF_0010 and DvMF_0011 are separated by 2 nucleotidesDvMF_0011 and DvMF_0012 are separated by 231 nucleotidesDvMF_0012 and DvMF_0013 are separated by 21 nucleotidesDvMF_0013 and DvMF_0014 are separated by 654 nucleotidesDvMF_0014 and DvMF_0015 are separated by 7 nucleotidesDvMF_0015 and DvMF_0016 overlap by 4 nucleotides DvMF_R0004: DvMF_R0004 - tRNA-Cys (RefSeq), at 9,731 to 9,805 _R0004 DvMF_R0005: DvMF_R0005 - tRNA-Gly (RefSeq), at 9,819 to 9,893 _R0005 DvMF_0008: DvMF_0008 - transcriptional regulator, TraR/DksA family (RefSeq), at 10,369 to 10,731 _0008 DvMF_0009: DvMF_0009 - protein of unknown function DUF814 (RefSeq), at 10,937 to 12,919 _0009 DvMF_0010: DvMF_0010 - diguanylate phosphodiesterase (RefSeq), at 13,084 to 14,547 _0010 DvMF_0011: DvMF_0011 - L-serine ammonia-lyase (EC 4.3.1.17) (from data), at 14,550 to 15,929 _0011 DvMF_0012: DvMF_0012 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 16,161 to 17,159 _0012 DvMF_0013: DvMF_0013 - fructose-1,6-bisphosphate aldolase, class II (RefSeq), at 17,181 to 18,104 _0013 DvMF_0014: DvMF_0014 - hypothetical protein (RefSeq), at 18,759 to 21,203 _0014 DvMF_0015: DvMF_0015 - peptidase C26 (RefSeq), at 21,211 to 21,834 _0015 DvMF_0016: DvMF_0016 - transferase, putative (RefSeq), at 21,831 to 22,622 _0016
Locus Name Description Strand Phenotype
DvMF_R0004 DvMF_R0004 tRNA-Cys (RefSeq) - no data
DvMF_R0005 DvMF_R0005 tRNA-Gly (RefSeq) - no data
DvMF_0008 DvMF_0008 transcriptional regulator, TraR/DksA family (RefSeq) + no data
DvMF_0009 DvMF_0009 protein of unknown function DUF814 (RefSeq) + insig.
DvMF_0010 DvMF_0010 diguanylate phosphodiesterase (RefSeq) + cofit
DvMF_0011 DvMF_0011 L-serine ammonia-lyase (EC 4.3.1.17) (from data) + strong
DvMF_0012 DvMF_0012 glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq) - no data
DvMF_0013 DvMF_0013 fructose-1,6-bisphosphate aldolase, class II (RefSeq) - no data
DvMF_0014 DvMF_0014 hypothetical protein (RefSeq) + insig.
DvMF_0015 DvMF_0015 peptidase C26 (RefSeq) + insig.
DvMF_0016 DvMF_0016 transferase, putative (RefSeq) + strong

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