Gene info for Shewana3_3279 in Shewanella sp. ANA-3

Updated annotation (from data): Vitamin B12 transporter, permease component (fecCD-like)
Rationale: This protein is cofit with the B12-dependent methionine synthase MetH and is FecCD-like. It probably works with Shewana3_3280 (ABC transporter domain protein with similar phenotypes) and Shewana3_3272 (periplasmic binding protein). This protein is similar to SO_1033 which is also involved in B12 uptake (it is strongly cofit with metH; also see PMCid:PMC3219624)
Original annotation: transport system permease protein (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 248374, - strand, nucleotides 3,918,906 to 3,920,051
See nucleotide sequence around Shewana3_3279 or for all of scaffold 248374

Other databases: MicrobesOnline, NCBI, IMG: 639727889, uniprot: A0L0D4

Nearby Genes

500 ntShewana3_3274 and Shewana3_3275 are separated by 28 nucleotidesShewana3_3275 and Shewana3_3276 are separated by 87 nucleotidesShewana3_3276 and cobS overlap by 4 nucleotidescobS and cobT are separated by 96 nucleotidescobT and Shewana3_3279 are separated by 162 nucleotidesShewana3_3279 and Shewana3_3280 overlap by 4 nucleotidesShewana3_3280 and Shewana3_3281 are separated by 472 nucleotidesShewana3_3281 and metH are separated by 209 nucleotidesmetH and Shewana3_3283 are separated by 539 nucleotidesShewana3_3283 and Shewana3_3284 overlap by 4 nucleotides Shewana3_3274: Shewana3_3274 - cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq), at 3,913,830 to 3,914,465 _3274 Shewana3_3275: Shewana3_3275 - cobyric acid synthase (RefSeq), at 3,914,494 to 3,916,119 _3275 Shewana3_3276: Shewana3_3276 - adenosylcobinamide kinase (RefSeq), at 3,916,207 to 3,916,809 _3276 Shewana3_3277: cobS - cobalamin synthase (RefSeq), at 3,916,806 to 3,917,594 cobS Shewana3_3278: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq), at 3,917,691 to 3,918,743 cobT Shewana3_3279: Shewana3_3279 - Vitamin B12 transporter, permease component (fecCD-like) (from data), at 3,918,906 to 3,920,051 _3279 Shewana3_3280: Shewana3_3280 - ABC transporter related (RefSeq), at 3,920,048 to 3,921,028 _3280 Shewana3_3281: Shewana3_3281 - phosphoglycerate mutase (RefSeq), at 3,921,501 to 3,922,223 _3281 Shewana3_3282: metH - B12-dependent methionine synthase (RefSeq), at 3,922,433 to 3,926,167 metH Shewana3_3283: Shewana3_3283 - hypothetical protein (RefSeq), at 3,926,707 to 3,927,225 _3283 Shewana3_3284: Shewana3_3284 - hypothetical protein (RefSeq), at 3,927,222 to 3,927,902 _3284
Locus Name Description Strand Phenotype
Shewana3_3274 Shewana3_3274 cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq) - insig.
Shewana3_3275 Shewana3_3275 cobyric acid synthase (RefSeq) - insig.
Shewana3_3276 Shewana3_3276 adenosylcobinamide kinase (RefSeq) - insig.
Shewana3_3277 cobS cobalamin synthase (RefSeq) - sig.
Shewana3_3278 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq) - insig.
Shewana3_3279 Shewana3_3279 Vitamin B12 transporter, permease component (fecCD-like) (from data) - strong
Shewana3_3280 Shewana3_3280 ABC transporter related (RefSeq) - strong
Shewana3_3281 Shewana3_3281 phosphoglycerate mutase (RefSeq) - insig.
Shewana3_3282 metH B12-dependent methionine synthase (RefSeq) + strong
Shewana3_3283 Shewana3_3283 hypothetical protein (RefSeq) - insig.
Shewana3_3284 Shewana3_3284 hypothetical protein (RefSeq) - cofit

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