Gene info for Shewana3_2066 in Shewanella sp. ANA-3

Updated annotation (from data): L-arabinose isomerase (EC 5.3.1.4)
Rationale: Specifically important for utilizing L-Arabinose. Automated validation from mutant phenotype: the predicted function (ARABISOM-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: L-arabinose isomerase (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 248374, + strand, nucleotides 2,473,107 to 2,474,609
See nucleotide sequence around Shewana3_2066 or for all of scaffold 248374

Other databases: MicrobesOnline, NCBI, IMG: 639726651, uniprot: A0KWX7

Nearby Genes

500 ntShewana3_2062 and Shewana3_R0088 are separated by 80 nucleotidesShewana3_R0088 and Shewana3_2063 are separated by 403 nucleotidesShewana3_2063 and Shewana3_2064 are separated by 369 nucleotidesShewana3_2064 and araD are separated by 1 nucleotidesaraD and Shewana3_2066 are separated by 38 nucleotidesShewana3_2066 and Shewana3_2067 are separated by 76 nucleotidesShewana3_2067 and Shewana3_2068 are separated by 235 nucleotidesShewana3_2068 and Shewana3_2069 are separated by 109 nucleotidesShewana3_2069 and Shewana3_2070 are separated by 149 nucleotidesShewana3_2070 and Shewana3_2071 are separated by 60 nucleotides Shewana3_2062: Shewana3_2062 - inner membrane transport protein YdhC (RefSeq), at 2,467,952 to 2,469,223 _2062 Shewana3_R0088: Shewana3_R0088 - tRNA-Ser (RefSeq), at 2,469,304 to 2,469,394 _R0088 Shewana3_2063: Shewana3_2063 - hypothetical protein (RefSeq), at 2,469,798 to 2,470,328 _2063 Shewana3_2064: Shewana3_2064 - ribulokinase (RefSeq), at 2,470,698 to 2,472,371 _2064 Shewana3_2065: araD - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data), at 2,472,373 to 2,473,068 araD Shewana3_2066: Shewana3_2066 - L-arabinose isomerase (EC 5.3.1.4) (from data), at 2,473,107 to 2,474,609 _2066 Shewana3_2067: Shewana3_2067 - HAD family hydrolase (RefSeq), at 2,474,686 to 2,475,294 _2067 Shewana3_2068: Shewana3_2068 - GntR family transcriptional regulator (RefSeq), at 2,475,530 to 2,476,246 _2068 Shewana3_2069: Shewana3_2069 - glycoside hydrolase family protein (RefSeq), at 2,476,356 to 2,477,303 _2069 Shewana3_2070: Shewana3_2070 - L-arabonate dehydratase (EC 4.2.1.25) (from data), at 2,477,453 to 2,479,213 _2070 Shewana3_2071: Shewana3_2071 - L-arabinose 1-dehydrogenase (EC 1.1.1.46) (from data), at 2,479,274 to 2,480,044 _2071
Locus Name Description Strand Phenotype
Shewana3_2062 Shewana3_2062 inner membrane transport protein YdhC (RefSeq) + strong
Shewana3_R0088 Shewana3_R0088 tRNA-Ser (RefSeq) + no data
Shewana3_2063 Shewana3_2063 hypothetical protein (RefSeq) - insig.
Shewana3_2064 Shewana3_2064 ribulokinase (RefSeq) + cofit
Shewana3_2065 araD L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data) + strong
Shewana3_2066 Shewana3_2066 L-arabinose isomerase (EC 5.3.1.4) (from data) + strong
Shewana3_2067 Shewana3_2067 HAD family hydrolase (RefSeq) + insig.
Shewana3_2068 Shewana3_2068 GntR family transcriptional regulator (RefSeq) + strong
Shewana3_2069 Shewana3_2069 glycoside hydrolase family protein (RefSeq) - cofit
Shewana3_2070 Shewana3_2070 L-arabonate dehydratase (EC 4.2.1.25) (from data) + strong
Shewana3_2071 Shewana3_2071 L-arabinose 1-dehydrogenase (EC 1.1.1.46) (from data) + strong

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