Gene info for Sama_3249 in Shewanella amazonensis SB2B

Name: dapF
Annotation: diaminopimelate epimerase (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 248323, - strand, nucleotides 3,843,457 to 3,844,284
See nucleotide sequence around Sama_3249 or for all of scaffold 248323

Other databases: MicrobesOnline, NCBI, IMG: 2518742527, uniprot: A1SAP5

Nearby Genes

500 ntSama_3244 and Sama_3245 are separated by 17 nucleotidesSama_3245 and Sama_3246 are separated by 108 nucleotidesSama_3246 and Sama_3247 overlap by 1 nucleotidesSama_3247 and Sama_3248 are separated by 2 nucleotidesSama_3248 and dapF overlap by 4 nucleotidesdapF and Sama_3250 are separated by 62 nucleotidesSama_3250 and Sama_3251 are separated by 11 nucleotidesSama_3251 and Sama_3252 are separated by 2 nucleotidesSama_3252 and cyaA are separated by 24 nucleotidescyaA and hemC are separated by 157 nucleotides Sama_3244: Sama_3244 - putative transcriptional regulator (RefSeq), at 3,840,011 to 3,840,502 _3244 Sama_3245: Sama_3245 - urease accessory protein UreJ (RefSeq), at 3,840,520 to 3,841,107 _3245 Sama_3246: Sama_3246 - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (RefSeq), at 3,841,216 to 3,841,932 _3246 Sama_3247: Sama_3247 - integrase/recombinase XerC (RefSeq), at 3,841,932 to 3,842,822 _3247 Sama_3248: Sama_3248 - hypothetical protein (RefSeq), at 3,842,825 to 3,843,460 _3248 Sama_3249: dapF - diaminopimelate epimerase (RefSeq), at 3,843,457 to 3,844,284 dapF Sama_3250: Sama_3250 - diaminopimelate decarboxylase (RefSeq), at 3,844,347 to 3,845,591 _3250 Sama_3251: Sama_3251 - hypothetical protein (RefSeq), at 3,845,603 to 3,845,842 _3251 Sama_3252: Sama_3252 - CyaY protein (RefSeq), at 3,845,845 to 3,846,177 _3252 Sama_3253: cyaA - adenylate cyclase (RefSeq), at 3,846,202 to 3,848,631 cyaA Sama_3254: hemC - porphobilinogen deaminase (RefSeq), at 3,848,789 to 3,849,769 hemC
Locus Name Description Strand Phenotype
Sama_3244 Sama_3244 putative transcriptional regulator (RefSeq) + insig.
Sama_3245 Sama_3245 urease accessory protein UreJ (RefSeq) - strong
Sama_3246 Sama_3246 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (RefSeq) - strong
Sama_3247 Sama_3247 integrase/recombinase XerC (RefSeq) - strong
Sama_3248 Sama_3248 hypothetical protein (RefSeq) - sig.
Sama_3249 dapF diaminopimelate epimerase (RefSeq) - no data
Sama_3250 Sama_3250 diaminopimelate decarboxylase (RefSeq) - strong
Sama_3251 Sama_3251 hypothetical protein (RefSeq) - no data
Sama_3252 Sama_3252 CyaY protein (RefSeq) + no data
Sama_3253 cyaA adenylate cyclase (RefSeq) - strong
Sama_3254 hemC porphobilinogen deaminase (RefSeq) + no data

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