Gene info for Sama_3044 in Shewanella amazonensis SB2B

Updated annotation (from data): yqiA-like hydrolase, affects the cell envelope
Rationale: PFam PF05728.8 (UPF0227). conserved phenotypes: important in most defined media conditions
Original annotation: hypothetical protein (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 248323, - strand, nucleotides 3,622,977 to 3,623,552
See nucleotide sequence around Sama_3044 or for all of scaffold 248323

Other databases: MicrobesOnline, NCBI, IMG: 2518742319, uniprot: A1SA40

Nearby Genes

500 ntSama_3039 and Sama_3040 are separated by 277 nucleotidesSama_3040 and Sama_3041 are separated by 149 nucleotidesSama_3041 and Sama_3042 overlap by 4 nucleotidesSama_3042 and Sama_3043 overlap by 1 nucleotidesSama_3043 and Sama_3044 are separated by 55 nucleotidesSama_3044 and Sama_3045 are separated by 28 nucleotidesSama_3045 and Sama_3046 are separated by 15 nucleotidesSama_3046 and Sama_3047 are separated by 11 nucleotidesSama_3047 and tolC are separated by 237 nucleotidestolC and Sama_3049 are separated by 58 nucleotides Sama_3039: Sama_3039 - Phosphoglycerate dehydrogenase (EC 1.1.1.95) (from data), at 3,616,048 to 3,616,974 _3039 Sama_3040: Sama_3040 - bacterioferritin-associated ferredoxin (RefSeq), at 3,617,252 to 3,617,443 _3040 Sama_3041: Sama_3041 - DNA topoisomerase IV subunit A (RefSeq), at 3,617,593 to 3,619,863 _3041 Sama_3042: Sama_3042 - L-sorbosone dehydrogenase, putative (RefSeq), at 3,619,860 to 3,621,035 _3042 Sama_3043: Sama_3043 - DNA topoisomerase IV subunit B (RefSeq), at 3,621,035 to 3,622,921 _3043 Sama_3044: Sama_3044 - yqiA-like hydrolase, affects the cell envelope (from data), at 3,622,977 to 3,623,552 _3044 Sama_3045: Sama_3045 - lacZ expression regulator (RefSeq), at 3,623,581 to 3,624,420 _3045 Sama_3046: Sama_3046 - hypothetical protein (RefSeq), at 3,624,436 to 3,624,855 _3046 Sama_3047: Sama_3047 - ADP-ribose diphosphatase (RefSeq), at 3,624,867 to 3,625,481 _3047 Sama_3048: tolC - outer membrane channel protein (RefSeq), at 3,625,719 to 3,627,017 tolC Sama_3049: Sama_3049 - hypothetical protein (RefSeq), at 3,627,076 to 3,627,816 _3049
Locus Name Description Strand Phenotype
Sama_3039 Sama_3039 Phosphoglycerate dehydrogenase (EC 1.1.1.95) (from data) + sig.
Sama_3040 Sama_3040 bacterioferritin-associated ferredoxin (RefSeq) + insig.
Sama_3041 Sama_3041 DNA topoisomerase IV subunit A (RefSeq) - no data
Sama_3042 Sama_3042 L-sorbosone dehydrogenase, putative (RefSeq) - strong
Sama_3043 Sama_3043 DNA topoisomerase IV subunit B (RefSeq) - no data
Sama_3044 Sama_3044 yqiA-like hydrolase, affects the cell envelope (from data) - strong
Sama_3045 Sama_3045 lacZ expression regulator (RefSeq) - strong
Sama_3046 Sama_3046 hypothetical protein (RefSeq) - insig.
Sama_3047 Sama_3047 ADP-ribose diphosphatase (RefSeq) - insig.
Sama_3048 tolC outer membrane channel protein (RefSeq) + strong
Sama_3049 Sama_3049 hypothetical protein (RefSeq) - sig.

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