Gene info for Sama_2380 in Shewanella amazonensis SB2B

Updated annotation (from data): Isocitrate lyase (EC 4.1.3.1)
Rationale: Specifically important for utilizing Tween 20. Automated validation from mutant phenotype: the predicted function (ISOCIT-CLEAV-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: isocitrate lyase (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 248323, - strand, nucleotides 2,858,428 to 2,859,747
See nucleotide sequence around Sama_2380 or for all of scaffold 248323

Other databases: MicrobesOnline, NCBI, IMG: 2518741628, uniprot: A1S878

Nearby Genes

500 ntSama_2375 and Sama_2376 are separated by 5 nucleotidesSama_2376 and Sama_2377 are separated by 48 nucleotidesSama_2377 and Sama_2378 are separated by 37 nucleotidesSama_2378 and Sama_2379 overlap by 7 nucleotidesSama_2379 and Sama_2380 are separated by 261 nucleotidesSama_2380 and Sama_2381 are separated by 78 nucleotidesSama_2381 and Sama_2382 are separated by 1336 nucleotidesSama_2382 and Sama_2383 are separated by 0 nucleotidesSama_2383 and Sama_2384 are separated by 54 nucleotidesSama_2384 and Sama_2385 are separated by 313 nucleotides Sama_2375: Sama_2375 - transporter, putative (RefSeq), at 2,852,135 to 2,853,574 _2375 Sama_2376: Sama_2376 - GGDEF family protein (RefSeq), at 2,853,580 to 2,855,325 _2376 Sama_2377: Sama_2377 - hypothetical protein (RefSeq), at 2,855,374 to 2,856,198 _2377 Sama_2378: Sama_2378 - hypothetical protein (RefSeq), at 2,856,236 to 2,856,706 _2378 Sama_2379: Sama_2379 - putative signal transduction protein (RefSeq), at 2,856,700 to 2,858,166 _2379 Sama_2380: Sama_2380 - Isocitrate lyase (EC 4.1.3.1) (from data), at 2,858,428 to 2,859,747 _2380 Sama_2381: Sama_2381 - malate synthase (RefSeq), at 2,859,826 to 2,861,457 _2381 Sama_2382: Sama_2382 - GGDEF family protein (RefSeq), at 2,862,794 to 2,864,743 _2382 Sama_2383: Sama_2383 - hypothetical protein (RefSeq), at 2,864,744 to 2,864,959 _2383 Sama_2384: Sama_2384 - methylase, putative (RefSeq), at 2,865,014 to 2,865,805 _2384 Sama_2385: Sama_2385 - small protein A (RefSeq), at 2,866,119 to 2,866,610 _2385
Locus Name Description Strand Phenotype
Sama_2375 Sama_2375 transporter, putative (RefSeq) + insig.
Sama_2376 Sama_2376 GGDEF family protein (RefSeq) + insig.
Sama_2377 Sama_2377 hypothetical protein (RefSeq) + insig.
Sama_2378 Sama_2378 hypothetical protein (RefSeq) + insig.
Sama_2379 Sama_2379 putative signal transduction protein (RefSeq) - insig.
Sama_2380 Sama_2380 Isocitrate lyase (EC 4.1.3.1) (from data) - strong
Sama_2381 Sama_2381 malate synthase (RefSeq) - strong
Sama_2382 Sama_2382 GGDEF family protein (RefSeq) - insig.
Sama_2383 Sama_2383 hypothetical protein (RefSeq) - insig.
Sama_2384 Sama_2384 methylase, putative (RefSeq) - insig.
Sama_2385 Sama_2385 small protein A (RefSeq) + sig.

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