Gene info for Sama_2209 in Shewanella amazonensis SB2B

Updated annotation (from data): alpha-ketoglutarate TRAP transporter, solute receptor component
Rationale: specific phenotype on a-ketoglutarate. A putrescine ABC transporter (Sama_2642:Sama_2638) is also important in this condition, which is not explained. This organism can also utilize succinate or fumarate (but not L-malate), which we do not have fitness data for these under aerobic conditions. This could also transport some C4 compounds.
Original annotation: C4-dicarboxylate-binding periplasmic protein (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 248323, + strand, nucleotides 2,670,054 to 2,671,073
See nucleotide sequence around Sama_2209 or for all of scaffold 248323

Other databases: MicrobesOnline, NCBI, IMG: 2518741458, uniprot: A1S7Q8

Nearby Genes

500 ntSama_R0096 and Sama_R0097 are separated by 36 nucleotidesSama_R0097 and Sama_R0098 are separated by 16 nucleotidesSama_R0098 and gltX are separated by 104 nucleotidesgltX and Sama_2208 are separated by 241 nucleotidesSama_2208 and Sama_2209 are separated by 268 nucleotidesSama_2209 and Sama_2210 are separated by 96 nucleotidesSama_2210 and Sama_2211 overlap by 4 nucleotidesSama_2211 and Sama_2212 are separated by 91 nucleotidesSama_2212 and Sama_2213 overlap by 11 nucleotidesSama_2213 and Sama_2214 overlap by 26 nucleotides Sama_R0096: Sama_R0096 - tRNA-Glu (RefSeq), at 2,667,523 to 2,667,598 _R0096 Sama_R0097: Sama_R0097 - tRNA-Glu (RefSeq), at 2,667,635 to 2,667,710 _R0097 Sama_R0098: Sama_R0098 - tRNA-Ala (RefSeq), at 2,667,727 to 2,667,802 _R0098 Sama_2207: gltX - glutamyl-tRNA synthetase (RefSeq), at 2,667,907 to 2,669,316 gltX Sama_2208: Sama_2208 - hypothetical protein (RefSeq), at 2,669,558 to 2,669,785 _2208 Sama_2209: Sama_2209 - alpha-ketoglutarate TRAP transporter, solute receptor component (from data), at 2,670,054 to 2,671,073 _2209 Sama_2210: Sama_2210 - alpha-ketoglutarate TRAP transporter, small permease component (from data), at 2,671,170 to 2,671,811 _2210 Sama_2211: Sama_2211 - alpha-ketoglutarate TRAP transporter, large permease component (from data), at 2,671,808 to 2,673,208 _2211 Sama_2212: Sama_2212 - putative two-component sensor histidine kinase protein (RefSeq), at 2,673,300 to 2,675,102 _2212 Sama_2213: Sama_2213 - response regulator receiver protein (RefSeq), at 2,675,092 to 2,676,477 _2213 Sama_2214: Sama_2214 - multidrug resistance protein, putative (RefSeq), at 2,676,452 to 2,677,681 _2214
Locus Name Description Strand Phenotype
Sama_R0096 Sama_R0096 tRNA-Glu (RefSeq) - no data
Sama_R0097 Sama_R0097 tRNA-Glu (RefSeq) - no data
Sama_R0098 Sama_R0098 tRNA-Ala (RefSeq) - no data
Sama_2207 gltX glutamyl-tRNA synthetase (RefSeq) - no data
Sama_2208 Sama_2208 hypothetical protein (RefSeq) + insig.
Sama_2209 Sama_2209 alpha-ketoglutarate TRAP transporter, solute receptor component (from data) + strong
Sama_2210 Sama_2210 alpha-ketoglutarate TRAP transporter, small permease component (from data) + strong
Sama_2211 Sama_2211 alpha-ketoglutarate TRAP transporter, large permease component (from data) + strong
Sama_2212 Sama_2212 putative two-component sensor histidine kinase protein (RefSeq) + strong
Sama_2213 Sama_2213 response regulator receiver protein (RefSeq) + strong
Sama_2214 Sama_2214 multidrug resistance protein, putative (RefSeq) - strong

Or browse nearby genes

Or see the comparative fitness browser