Gene info for Sama_2080 in Shewanella amazonensis SB2B

Updated annotation (from data): DNA damage response helicase (yejH or radD)
Rationale: Conserved and specific phenotype: important for resisting cisplatin. Also important for resisting ionizing radiationa and UV radiation in E. coli (PMID:25425430)
Original annotation: helicase (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 248323, + strand, nucleotides 2,522,415 to 2,524,181
See nucleotide sequence around Sama_2080 or for all of scaffold 248323

Other databases: MicrobesOnline, NCBI, IMG: 2518741307, uniprot: A1S7C9

Nearby Genes

500 ntSama_2075 and Sama_2076 are separated by 154 nucleotidesSama_2076 and Sama_2077 are separated by 63 nucleotidesSama_2077 and Sama_2078 are separated by 164 nucleotidesSama_2078 and Sama_2079 are separated by 178 nucleotidesSama_2079 and Sama_2080 are separated by 104 nucleotidesSama_2080 and grxA are separated by 73 nucleotidesgrxA and Sama_2082 are separated by 121 nucleotidesSama_2082 and Sama_2083 are separated by 75 nucleotidesSama_2083 and Sama_R0079 are separated by 121 nucleotidesSama_R0079 and Sama_R0080 are separated by 41 nucleotides Sama_2075: Sama_2075 - thioesterase superfamily protein (RefSeq), at 2,513,940 to 2,514,365 _2075 Sama_2076: Sama_2076 - response regulator receiver protein (RefSeq), at 2,514,520 to 2,515,236 _2076 Sama_2077: Sama_2077 - oxidoreductase (RefSeq), at 2,515,300 to 2,516,589 _2077 Sama_2078: Sama_2078 - sensor histidine kinase/response regulator (RefSeq), at 2,516,754 to 2,520,179 _2078 Sama_2079: Sama_2079 - acetyl-CoA synthetase (RefSeq), at 2,520,358 to 2,522,310 _2079 Sama_2080: Sama_2080 - DNA damage response helicase (yejH or radD) (from data), at 2,522,415 to 2,524,181 _2080 Sama_2081: grxA - glutaredoxin 1 (RefSeq), at 2,524,255 to 2,524,515 grxA Sama_2082: Sama_2082 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein (RefSeq), at 2,524,637 to 2,525,947 _2082 Sama_2083: Sama_2083 - hypothetical protein (RefSeq), at 2,526,023 to 2,527,171 _2083 Sama_R0079: Sama_R0079 - tRNA-Lys (RefSeq), at 2,527,293 to 2,527,368 _R0079 Sama_R0080: Sama_R0080 - tRNA-Lys (RefSeq), at 2,527,410 to 2,527,485 _R0080
Locus Name Description Strand Phenotype
Sama_2075 Sama_2075 thioesterase superfamily protein (RefSeq) + insig.
Sama_2076 Sama_2076 response regulator receiver protein (RefSeq) + strong
Sama_2077 Sama_2077 oxidoreductase (RefSeq) - insig.
Sama_2078 Sama_2078 sensor histidine kinase/response regulator (RefSeq) - strong
Sama_2079 Sama_2079 acetyl-CoA synthetase (RefSeq) + strong
Sama_2080 Sama_2080 DNA damage response helicase (yejH or radD) (from data) + sig.
Sama_2081 grxA glutaredoxin 1 (RefSeq) + sig.
Sama_2082 Sama_2082 Signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein (RefSeq) + insig.
Sama_2083 Sama_2083 hypothetical protein (RefSeq) - insig.
Sama_R0079 Sama_R0079 tRNA-Lys (RefSeq) - no data
Sama_R0080 Sama_R0080 tRNA-Lys (RefSeq) - no data

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