Gene info for Sama_1743 in Shewanella amazonensis SB2B

Updated annotation (from data): Acyl-CoA dehydrogenase (EC 1.3.8.-)
Rationale: Specifically important in carbon source Tween 20. This confirms that it is an acyl-CoA dehydrogenase and not a biosynthetic acyl-ACP dehydrogenase (as suggested by KEGG). Since Tween 20 is hydrolyzed to a C12 fatty acid, this may act on long chain acyl-CoAs, or it might act on medium-chain acyl-CoA intermediates.
Original annotation: acyl-CoA dehydrogenase family protein (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 248323, + strand, nucleotides 2,132,170 to 2,133,906
See nucleotide sequence around Sama_1743 or for all of scaffold 248323

Other databases: MicrobesOnline, NCBI, IMG: 2518740956, uniprot: A1S6E2

Nearby Genes

500 ntSama_1738 and Sama_1739 are separated by 1 nucleotidesSama_1739 and Sama_1740 are separated by 27 nucleotidesSama_1740 and Sama_1741 are separated by 64 nucleotidesSama_1741 and Sama_1742 are separated by 76 nucleotidesSama_1742 and Sama_1743 are separated by 133 nucleotidesSama_1743 and Sama_1744 are separated by 148 nucleotidesSama_1744 and Sama_1745 are separated by 73 nucleotidesSama_1745 and Sama_1746 are separated by 208 nucleotidesSama_1746 and pssA are separated by 11 nucleotidespssA and Sama_1748 are separated by 181 nucleotides Sama_1738: Sama_1738 - membrane protein (RefSeq), at 2,128,299 to 2,128,640 _1738 Sama_1739: Sama_1739 - tetratricopeptide repeat protein (RefSeq), at 2,128,642 to 2,129,802 _1739 Sama_1740: Sama_1740 - orotidine 5'-phosphate decarboxylase (RefSeq), at 2,129,830 to 2,130,531 _1740 Sama_1741: Sama_1741 - short chain dehydrogenase (RefSeq), at 2,130,596 to 2,131,414 _1741 Sama_1742: Sama_1742 - hypothetical protein (RefSeq), at 2,131,491 to 2,132,036 _1742 Sama_1743: Sama_1743 - Acyl-CoA dehydrogenase (EC 1.3.8.-) (from data), at 2,132,170 to 2,133,906 _1743 Sama_1744: Sama_1744 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 2,134,055 to 2,135,719 _1744 Sama_1745: Sama_1745 - hypothetical protein (RefSeq), at 2,135,793 to 2,135,978 _1745 Sama_1746: Sama_1746 - hypothetical protein (RefSeq), at 2,136,187 to 2,136,513 _1746 Sama_1747: pssA - phosphatidylserine synthase (RefSeq), at 2,136,525 to 2,137,838 pssA Sama_1748: Sama_1748 - hypothetical protein (RefSeq), at 2,138,020 to 2,138,778 _1748
Locus Name Description Strand Phenotype
Sama_1738 Sama_1738 membrane protein (RefSeq) + no data
Sama_1739 Sama_1739 tetratricopeptide repeat protein (RefSeq) + no data
Sama_1740 Sama_1740 orotidine 5'-phosphate decarboxylase (RefSeq) + strong
Sama_1741 Sama_1741 short chain dehydrogenase (RefSeq) + insig.
Sama_1742 Sama_1742 hypothetical protein (RefSeq) + insig.
Sama_1743 Sama_1743 Acyl-CoA dehydrogenase (EC 1.3.8.-) (from data) + cofit
Sama_1744 Sama_1744 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) - insig.
Sama_1745 Sama_1745 hypothetical protein (RefSeq) - insig.
Sama_1746 Sama_1746 hypothetical protein (RefSeq) + insig.
Sama_1747 pssA phosphatidylserine synthase (RefSeq) + no data
Sama_1748 Sama_1748 hypothetical protein (RefSeq) + insig.

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