Gene info for Sama_1631 in Shewanella amazonensis SB2B

Updated annotation (from data): Histidine ammonia-lyase (EC 4.3.1.3)
Rationale: Specifically important for utilizing L-Histidine. Automated validation from mutant phenotype: the predicted function (HISTIDINE-AMMONIA-LYASE-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: histidine ammonia-lyase (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 248323, + strand, nucleotides 1,995,924 to 1,997,417
See nucleotide sequence around Sama_1631 or for all of scaffold 248323

Other databases: MicrobesOnline, NCBI, IMG: 2518740842, uniprot: A1S632

Nearby Genes

500 ntastD and Sama_1627 overlap by 4 nucleotidesSama_1627 and argD are separated by 77 nucleotidesargD and Sama_1629 are separated by 153 nucleotidesSama_1629 and Sama_1630 are separated by 76 nucleotidesSama_1630 and Sama_1631 are separated by 204 nucleotidesSama_1631 and Sama_1632 are separated by 17 nucleotidesSama_1632 and Sama_1633 are separated by 379 nucleotidesSama_1633 and Sama_1634 are separated by 402 nucleotidesSama_1634 and Sama_1635 are separated by 785 nucleotidesSama_1635 and Sama_1636 are separated by 142 nucleotides Sama_1626: astD - succinylglutamic semialdehyde dehydrogenase (RefSeq), at 1,990,345 to 1,991,832 astD Sama_1627: Sama_1627 - arginine N-succinyltransferase (RefSeq), at 1,991,829 to 1,992,875 _1627 Sama_1628: argD - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq), at 1,992,953 to 1,994,170 argD Sama_1629: Sama_1629 - AsnC family transcriptional regulator (RefSeq), at 1,994,324 to 1,994,752 _1629 Sama_1630: Sama_1630 - LysR family transcriptional regulator (RefSeq), at 1,994,829 to 1,995,719 _1630 Sama_1631: Sama_1631 - Histidine ammonia-lyase (EC 4.3.1.3) (from data), at 1,995,924 to 1,997,417 _1631 Sama_1632: Sama_1632 - Urocanate hydratase (EC 4.2.1.49) (from data), at 1,997,435 to 1,999,447 _1632 Sama_1633: Sama_1633 - phage integrase family site specific recombinase (RefSeq), at 1,999,827 to 2,000,741 _1633 Sama_1634: Sama_1634 - hypothetical protein (RefSeq), at 2,001,144 to 2,001,548 _1634 Sama_1635: Sama_1635 - hypothetical protein (RefSeq), at 2,002,334 to 2,003,623 _1635 Sama_1636: Sama_1636 - no description, at 2,003,766 to 2,004,122 _1636
Locus Name Description Strand Phenotype
Sama_1626 astD succinylglutamic semialdehyde dehydrogenase (RefSeq) - strong
Sama_1627 Sama_1627 arginine N-succinyltransferase (RefSeq) - strong
Sama_1628 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) - strong
Sama_1629 Sama_1629 AsnC family transcriptional regulator (RefSeq) + strong
Sama_1630 Sama_1630 LysR family transcriptional regulator (RefSeq) - strong
Sama_1631 Sama_1631 Histidine ammonia-lyase (EC 4.3.1.3) (from data) + strong
Sama_1632 Sama_1632 Urocanate hydratase (EC 4.2.1.49) (from data) + strong
Sama_1633 Sama_1633 phage integrase family site specific recombinase (RefSeq) - insig.
Sama_1634 Sama_1634 hypothetical protein (RefSeq) + insig.
Sama_1635 Sama_1635 hypothetical protein (RefSeq) + insig.
Sama_1636 Sama_1636 no description + insig.

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