Gene info for Sama_1588 in Shewanella amazonensis SB2B

Updated annotation (from data): putative adhesin (DUF1302)
Rationale: Similar to PA3923, which binds laminin (PMC6890786) and is involved in biofilm formation (PMC8547006), so this is probably an adhesin.
Original annotation: hypothetical protein (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 248323, + strand, nucleotides 1,933,533 to 1,935,608
See nucleotide sequence around Sama_1588 or for all of scaffold 248323

Other databases: MicrobesOnline, NCBI, IMG: 2518740791, uniprot: A1S5Y9

Nearby Genes

500 ntSama_1583 and Sama_1584 are separated by 253 nucleotidesSama_1584 and Sama_1585 are separated by 29 nucleotidesSama_1585 and pepN are separated by 108 nucleotidespepN and Sama_1587 are separated by 87 nucleotidesSama_1587 and Sama_1588 are separated by 310 nucleotidesSama_1588 and Sama_1589 are separated by 12 nucleotidesSama_1589 and Sama_1590 are separated by 64 nucleotidesSama_1590 and Sama_1591 are separated by 37 nucleotidesSama_1591 and Sama_1592 are separated by 276 nucleotidesSama_1592 and Sama_1593 are separated by 139 nucleotides Sama_1583: Sama_1583 - GAF domain-containing protein (RefSeq), at 1,926,749 to 1,927,210 _1583 Sama_1584: Sama_1584 - putative solute/DNA competence effector (RefSeq), at 1,927,464 to 1,928,123 _1584 Sama_1585: Sama_1585 - carboxy-terminal protease (RefSeq), at 1,928,153 to 1,930,198 _1585 Sama_1586: pepN - aminopeptidase N (RefSeq), at 1,930,307 to 1,932,865 pepN Sama_1587: Sama_1587 - hypothetical protein (RefSeq), at 1,932,953 to 1,933,222 _1587 Sama_1588: Sama_1588 - putative adhesin (DUF1302) (from data), at 1,933,533 to 1,935,608 _1588 Sama_1589: Sama_1589 - adhesin-associated sorting protein (DUF1329) (from data), at 1,935,621 to 1,936,985 _1589 Sama_1590: Sama_1590 - adhesin-associated BNR repeat protein (from data), at 1,937,050 to 1,938,060 _1590 Sama_1591: Sama_1591 - adhesin-associated MmpL efflux pump (from data), at 1,938,098 to 1,940,404 _1591 Sama_1592: Sama_1592 - hypothetical protein (RefSeq), at 1,940,681 to 1,945,522 _1592 Sama_1593: Sama_1593 - dihydroorotate dehydrogenase 2 (RefSeq), at 1,945,662 to 1,946,681 _1593
Locus Name Description Strand Phenotype
Sama_1583 Sama_1583 GAF domain-containing protein (RefSeq) + insig.
Sama_1584 Sama_1584 putative solute/DNA competence effector (RefSeq) + no data
Sama_1585 Sama_1585 carboxy-terminal protease (RefSeq) + strong
Sama_1586 pepN aminopeptidase N (RefSeq) + insig.
Sama_1587 Sama_1587 hypothetical protein (RefSeq) + no data
Sama_1588 Sama_1588 putative adhesin (DUF1302) (from data) + strong
Sama_1589 Sama_1589 adhesin-associated sorting protein (DUF1329) (from data) + strong
Sama_1590 Sama_1590 adhesin-associated BNR repeat protein (from data) + cofit
Sama_1591 Sama_1591 adhesin-associated MmpL efflux pump (from data) + cofit
Sama_1592 Sama_1592 hypothetical protein (RefSeq) + strong
Sama_1593 Sama_1593 dihydroorotate dehydrogenase 2 (RefSeq) + strong

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