Gene info for Sama_0560 in Shewanella amazonensis SB2B

Updated annotation (from data): D-mannose isomerase (EC 5.3.1.7)
Rationale: Specifically important for: D-Mannose. This is the first step in D-mannose catabolism. Also see PMID:20836887, PMCID: PMC4436071
Original annotation: hypothetical protein (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 248323, - strand, nucleotides 695,465 to 696,634
See nucleotide sequence around Sama_0560 or for all of scaffold 248323

Other databases: MicrobesOnline, NCBI, IMG: 2518739734, uniprot: A1S312

Nearby Genes

500 ntSama_0555 and Sama_0556 are separated by 45 nucleotidesSama_0556 and Sama_0557 are separated by 494 nucleotidesSama_0557 and Sama_0558 are separated by 120 nucleotidesSama_0558 and Sama_0559 are separated by 121 nucleotidesSama_0559 and Sama_0560 are separated by 457 nucleotidesSama_0560 and Sama_0561 are separated by 21 nucleotidesSama_0561 and Sama_0562 overlap by 4 nucleotidesSama_0562 and Sama_0563 are separated by 3 nucleotidesSama_0563 and Sama_0564 are separated by 45 nucleotidesSama_0564 and Sama_0565 are separated by 159 nucleotides Sama_0555: Sama_0555 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 684,514 to 688,713 _0555 Sama_0556: Sama_0556 - hypothetical protein (RefSeq), at 688,759 to 692,544 _0556 Sama_0557: Sama_0557 - no description, at 693,039 to 693,530 _0557 Sama_0558: Sama_0558 - hypothetical protein (RefSeq), at 693,651 to 694,433 _0558 Sama_0559: Sama_0559 - hypothetical protein (RefSeq), at 694,555 to 695,007 _0559 Sama_0560: Sama_0560 - D-mannose isomerase (EC 5.3.1.7) (from data), at 695,465 to 696,634 _0560 Sama_0561: Sama_0561 - Fructokinase (EC 2.7.1.4) (from data), at 696,656 to 697,687 _0561 Sama_0562: Sama_0562 - D-mannose transporter (MFS superfamily) (from data), at 697,684 to 698,925 _0562 Sama_0563: Sama_0563 - alpha-1,2-mannosidase family protein (RefSeq), at 698,929 to 701,478 _0563 Sama_0564: Sama_0564 - alpha-1,2-mannosidase family protein (RefSeq), at 701,524 to 703,878 _0564 Sama_0565: Sama_0565 - LacI family transcription regulator (RefSeq), at 704,038 to 705,057 _0565
Locus Name Description Strand Phenotype
Sama_0555 Sama_0555 peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq) - insig.
Sama_0556 Sama_0556 hypothetical protein (RefSeq) - insig.
Sama_0557 Sama_0557 no description - insig.
Sama_0558 Sama_0558 hypothetical protein (RefSeq) + insig.
Sama_0559 Sama_0559 hypothetical protein (RefSeq) - insig.
Sama_0560 Sama_0560 D-mannose isomerase (EC 5.3.1.7) (from data) - strong
Sama_0561 Sama_0561 Fructokinase (EC 2.7.1.4) (from data) - strong
Sama_0562 Sama_0562 D-mannose transporter (MFS superfamily) (from data) - strong
Sama_0563 Sama_0563 alpha-1,2-mannosidase family protein (RefSeq) - strong
Sama_0564 Sama_0564 alpha-1,2-mannosidase family protein (RefSeq) - strong
Sama_0565 Sama_0565 LacI family transcription regulator (RefSeq) + strong

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