Gene info for Shew_2360 in Shewanella loihica PV-4

Updated annotation (from data): D-hydroxyproline dehydrogenase
Rationale: Specific phenotype: utilization of Gelatin. L-hydroxyproline is a major component of gelatin and converted to D-hydroxyproline by Shew_2363 (PMC4113996). Shew_2360 is 44% identical to the D-hydroxyproline dehydrogenase from Pseudomonas putida (PMC3463351). The P.putida enzyme was studied with an artificial electron acceptor and the in vivo acceptor does not seem to be known. Some related enzymes are D-amino acid oxidases (using O2 as the acceptor) but we suspect that Shew_2360 is not an oxidase.
Original annotation: D-amino-acid dehydrogenase (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 113993, - strand, nucleotides 2,760,413 to 2,761,753
See nucleotide sequence around Shew_2360 or for all of scaffold 113993

Other databases: MicrobesOnline, NCBI, uniprot: A3QFH8

Nearby Genes

500 ntShew_R0084 and Shew_R0085 are separated by 193 nucleotidesShew_R0085 and Shew_2357 are separated by 663 nucleotidesShew_2357 and Shew_2358 are separated by 173 nucleotidesShew_2358 and Shew_2359 are separated by 69 nucleotidesShew_2359 and Shew_2360 are separated by 161 nucleotidesShew_2360 and Shew_2361 overlap by 4 nucleotidesShew_2361 and Shew_2362 are separated by 203 nucleotidesShew_2362 and Shew_2363 are separated by 20 nucleotidesShew_2363 and Shew_2364 are separated by 26 nucleotidesShew_2364 and Shew_2365 are separated by 106 nucleotides Shew_R0084: Shew_R0084 - tRNA-Ile (RefSeq), at 2,755,054 to 2,755,130 _R0084 Shew_R0085: Shew_R0085 - 16S ribosomal RNA (RefSeq), at 2,755,324 to 2,756,880 _R0085 Shew_2357: Shew_2357 - D,D-heptose 1,7-bisphosphate phosphatase (RefSeq), at 2,757,544 to 2,758,098 _2357 Shew_2358: Shew_2358 - peptidase M24 (RefSeq), at 2,758,272 to 2,759,591 _2358 Shew_2359: Shew_2359 - uracil-DNA glycosylase superfamily protein (RefSeq), at 2,759,661 to 2,760,251 _2359 Shew_2360: Shew_2360 - D-hydroxyproline dehydrogenase (from data), at 2,760,413 to 2,761,753 _2360 Shew_2361: Shew_2361 - proline racemase (RefSeq), at 2,761,750 to 2,762,790 _2361 Shew_2362: Shew_2362 - dihydrodipicolinate synthase (RefSeq), at 2,762,994 to 2,763,908 _2362 Shew_2363: Shew_2363 - proline racemase (RefSeq), at 2,763,929 to 2,764,930 _2363 Shew_2364: Shew_2364 - aldehyde dehydrogenase (RefSeq), at 2,764,957 to 2,766,522 _2364 Shew_2365: Shew_2365 - GntR family transcriptional regulator (RefSeq), at 2,766,629 to 2,767,300 _2365
Locus Name Description Strand Phenotype
Shew_R0084 Shew_R0084 tRNA-Ile (RefSeq) - no data
Shew_R0085 Shew_R0085 16S ribosomal RNA (RefSeq) - no data
Shew_2357 Shew_2357 D,D-heptose 1,7-bisphosphate phosphatase (RefSeq) - strong
Shew_2358 Shew_2358 peptidase M24 (RefSeq) + sig.
Shew_2359 Shew_2359 uracil-DNA glycosylase superfamily protein (RefSeq) - insig.
Shew_2360 Shew_2360 D-hydroxyproline dehydrogenase (from data) - strong
Shew_2361 Shew_2361 proline racemase (RefSeq) - strong
Shew_2362 Shew_2362 dihydrodipicolinate synthase (RefSeq) + strong
Shew_2363 Shew_2363 proline racemase (RefSeq) + strong
Shew_2364 Shew_2364 aldehyde dehydrogenase (RefSeq) + sig.
Shew_2365 Shew_2365 GntR family transcriptional regulator (RefSeq) + sig.

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