Gene info for Shew_1276 in Shewanella loihica PV-4

Updated annotation (from data): Isocitrate lyase (EC 4.1.3.1)
Rationale: Specifically important for utilizing Potassium acetate. Automated validation from mutant phenotype: the predicted function (4.1.3.1) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: isocitrate lyase (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 113993, + strand, nucleotides 1,475,987 to 1,477,339
See nucleotide sequence around Shew_1276 or for all of scaffold 113993

Other databases: MicrobesOnline, NCBI, uniprot: A3QCE8

Nearby Genes

500 ntShew_1271 and Shew_1272 are separated by 348 nucleotidesShew_1272 and Shew_1273 are separated by 83 nucleotidesShew_1273 and Shew_1274 are separated by 14 nucleotidesShew_1274 and Shew_1275 are separated by 1303 nucleotidesShew_1275 and Shew_1276 are separated by 79 nucleotidesShew_1276 and Shew_1277 are separated by 348 nucleotidesShew_1277 and Shew_1278 are separated by 2 nucleotidesShew_1278 and Shew_1279 are separated by 23 nucleotidesShew_1279 and Shew_1280 are separated by 279 nucleotidesShew_1280 and Shew_1281 overlap by 41 nucleotides Shew_1271: Shew_1271 - SmpA/OmlA domain-containing protein (RefSeq), at 1,469,162 to 1,469,710 _1271 Shew_1272: Shew_1272 - uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq), at 1,470,059 to 1,470,868 _1272 Shew_1273: Shew_1273 - hypothetical protein (RefSeq), at 1,470,952 to 1,471,173 _1273 Shew_1274: Shew_1274 - diguanylate cyclase (RefSeq), at 1,471,188 to 1,472,969 _1274 Shew_1275: Shew_1275 - malate synthase (RefSeq), at 1,474,273 to 1,475,907 _1275 Shew_1276: Shew_1276 - Isocitrate lyase (EC 4.1.3.1) (from data), at 1,475,987 to 1,477,339 _1276 Shew_1277: Shew_1277 - putative signal transduction protein (RefSeq), at 1,477,688 to 1,479,136 _1277 Shew_1278: Shew_1278 - hypothetical protein (RefSeq), at 1,479,139 to 1,479,612 _1278 Shew_1279: Shew_1279 - hypothetical protein (RefSeq), at 1,479,636 to 1,480,460 _1279 Shew_1280: Shew_1280 - CopG family transcriptional regulator (RefSeq), at 1,480,740 to 1,481,165 _1280 Shew_1281: Shew_1281 - hypothetical protein (RefSeq), at 1,481,125 to 1,481,868 _1281
Locus Name Description Strand Phenotype
Shew_1271 Shew_1271 SmpA/OmlA domain-containing protein (RefSeq) - no data
Shew_1272 Shew_1272 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) + insig.
Shew_1273 Shew_1273 hypothetical protein (RefSeq) + insig.
Shew_1274 Shew_1274 diguanylate cyclase (RefSeq) + sig.
Shew_1275 Shew_1275 malate synthase (RefSeq) + cofit
Shew_1276 Shew_1276 Isocitrate lyase (EC 4.1.3.1) (from data) + strong
Shew_1277 Shew_1277 putative signal transduction protein (RefSeq) + insig.
Shew_1278 Shew_1278 hypothetical protein (RefSeq) - insig.
Shew_1279 Shew_1279 hypothetical protein (RefSeq) - no data
Shew_1280 Shew_1280 CopG family transcriptional regulator (RefSeq) - insig.
Shew_1281 Shew_1281 hypothetical protein (RefSeq) - insig.

Or browse nearby genes

Or see the comparative fitness browser