Gene info for Shew_0548 in Shewanella loihica PV-4

Updated annotation (from data): yqiA-like hydrolase, affects the cell envelope
Rationale: PFam PF05728.8 (UPF0227). conserved phenotypes: important in most defined media conditions
Original annotation: hypothetical protein (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 113993, + strand, nucleotides 618,198 to 618,776
See nucleotide sequence around Shew_0548 or for all of scaffold 113993

Other databases: MicrobesOnline, NCBI, uniprot: A3QAC2

Nearby Genes

500 ntShew_0543 and tolC are separated by 67 nucleotidestolC and Shew_0545 are separated by 263 nucleotidesShew_0545 and Shew_0546 overlap by 4 nucleotidesShew_0546 and Shew_0547 are separated by 9 nucleotidesShew_0547 and Shew_0548 are separated by 194 nucleotidesShew_0548 and Shew_0549 are separated by 48 nucleotidesShew_0549 and Shew_0550 are separated by 47 nucleotidesShew_0550 and Shew_0551 overlap by 4 nucleotidesShew_0551 and Shew_0552 are separated by 77 nucleotidesShew_0552 and Shew_0553 are separated by 341 nucleotides Shew_0543: Shew_0543 - hypothetical protein (RefSeq), at 613,667 to 614,425 _0543 Shew_0544: tolC - outer membrane channel protein (RefSeq), at 614,493 to 615,839 tolC Shew_0545: Shew_0545 - ADP-ribose diphosphatase (RefSeq), at 616,103 to 616,711 _0545 Shew_0546: Shew_0546 - hypothetical protein (RefSeq), at 616,708 to 617,154 _0546 Shew_0547: Shew_0547 - calcineurin phosphoesterase C-terminal domain-containing protein (RefSeq), at 617,164 to 618,003 _0547 Shew_0548: Shew_0548 - yqiA-like hydrolase, affects the cell envelope (from data), at 618,198 to 618,776 _0548 Shew_0549: Shew_0549 - DNA topoisomerase IV subunit B (RefSeq), at 618,825 to 620,711 _0549 Shew_0550: Shew_0550 - L-sorbosone dehydrogenase, putative (RefSeq), at 620,759 to 621,925 _0550 Shew_0551: Shew_0551 - DNA topoisomerase IV subunit A (RefSeq), at 621,922 to 624,189 _0551 Shew_0552: Shew_0552 - BFD/(2Fe-2S)-binding domain-containing protein (RefSeq), at 624,267 to 624,458 _0552 Shew_0553: Shew_0553 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 624,800 to 625,726 _0553
Locus Name Description Strand Phenotype
Shew_0543 Shew_0543 hypothetical protein (RefSeq) + strong
Shew_0544 tolC outer membrane channel protein (RefSeq) - strong
Shew_0545 Shew_0545 ADP-ribose diphosphatase (RefSeq) + insig.
Shew_0546 Shew_0546 hypothetical protein (RefSeq) + insig.
Shew_0547 Shew_0547 calcineurin phosphoesterase C-terminal domain-containing protein (RefSeq) + no data
Shew_0548 Shew_0548 yqiA-like hydrolase, affects the cell envelope (from data) + strong
Shew_0549 Shew_0549 DNA topoisomerase IV subunit B (RefSeq) + no data
Shew_0550 Shew_0550 L-sorbosone dehydrogenase, putative (RefSeq) + strong
Shew_0551 Shew_0551 DNA topoisomerase IV subunit A (RefSeq) + no data
Shew_0552 Shew_0552 BFD/(2Fe-2S)-binding domain-containing protein (RefSeq) - no data
Shew_0553 Shew_0553 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) - sig.

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