Gene info for SO_t001 in Shewanella oneidensis MR-1

Name: tRNA-Asp-1
Annotation: tRNA-Asp (RefSeq)
Type 5: Transfer RNA
Located on scaffold 139, + strand, nucleotides 51,211 to 51,287
See nucleotide sequence around SO_t001 or for all of scaffold 139

Other databases: MicrobesOnline

Nearby Genes

500 ntSO0042 and SO0043 are separated by 313 nucleotidesSO0043 and Sp16SC are separated by 164 nucleotidesSp16SC and Sp23SC are separated by 316 nucleotidesSp23SC and Sp5SC are separated by 203 nucleotidesSp5SC and tRNA-Asp-1 are separated by 34 nucleotidestRNA-Asp-1 and SO0044 are separated by 440 nucleotidesSO0044 and SO0045 are separated by 24 nucleotidesSO0045 and SO0046 overlap by 26 nucleotidesSO0046 and SO0047 are separated by 9 nucleotidesSO0047 and SO0048 are separated by 48 nucleotides SO0042: SO0042 - carbonic anhydrase, family 3 (NCBI ptt file), at 44,973 to 45,521 SO0042 SO0043: SO0043 - hypothetical protein (NCBI ptt file), at 45,835 to 45,951 SO0043 SO_r001: Sp16SC - 16S ribosomal RNA (RefSeq), at 46,116 to 47,644 Sp16SC SO_r002: Sp23SC - 23S ribosomal RNA (RefSeq), at 47,961 to 50,853 Sp23SC SO_r003: Sp5SC - 5S ribosomal RNA (RefSeq), at 51,057 to 51,176 Sp5SC SO_t001: tRNA-Asp-1 - tRNA-Asp (RefSeq), at 51,211 to 51,287 tRNA-Asp-1 SO0044: SO0044 - conserved hypothetical protein (NCBI ptt file), at 51,728 to 51,979 SO0044 SO0045: SO0045 - Rrf2 family protein (NCBI ptt file), at 52,004 to 52,459 SO0045 SO0046: SO0046 - conserved hypothetical protein (NCBI ptt file), at 52,434 to 53,189 SO0046 SO0047: SO0047 - carboxyl-terminal protease, putative (NCBI ptt file), at 53,199 to 54,407 SO0047 SO0048: SO0048 - peptidase, M23/M37 family (NCBI ptt file), at 54,456 to 55,490 SO0048
Locus Name Description Strand Phenotype
SO0042 SO0042 carbonic anhydrase, family 3 (NCBI ptt file) - sig.
SO0043 SO0043 hypothetical protein (NCBI ptt file) + no data
SO_r001 Sp16SC 16S ribosomal RNA (RefSeq) + no data
SO_r002 Sp23SC 23S ribosomal RNA (RefSeq) + no data
SO_r003 Sp5SC 5S ribosomal RNA (RefSeq) + no data
SO_t001 tRNA-Asp-1 tRNA-Asp (RefSeq) + no data
SO0044 SO0044 conserved hypothetical protein (NCBI ptt file) + insig.
SO0045 SO0045 Rrf2 family protein (NCBI ptt file) + insig.
SO0046 SO0046 conserved hypothetical protein (NCBI ptt file) - insig.
SO0047 SO0047 carboxyl-terminal protease, putative (NCBI ptt file) - insig.
SO0048 SO0048 peptidase, M23/M37 family (NCBI ptt file) - strong

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