Gene info for Dshi_3420 in Dinoroseobacter shibae DFL-12

Updated annotation (from data): Glycerol kinase (EC 2.7.1.30)
Rationale: Specifically important for utilizing Glycerol. Automated validation from mutant phenotype: the predicted function (GLYCEROL-KIN-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: glycerol kinase (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 57145, + strand, nucleotides 3,599,365 to 3,600,924
See nucleotide sequence around Dshi_3420 or for all of scaffold 57145

Other databases: MicrobesOnline, NCBI, IMG: 2501025308, uniprot: A8LP88

Nearby Genes

500 ntDshi_3415 and Dshi_3416 are separated by 51 nucleotidesDshi_3416 and Dshi_3417 are separated by 73 nucleotidesDshi_3417 and Dshi_3418 are separated by 10 nucleotidesDshi_3418 and Dshi_3419 are separated by 74 nucleotidesDshi_3419 and Dshi_3420 are separated by 57 nucleotidesDshi_3420 and Dshi_3421 are separated by 588 nucleotidesDshi_3421 and Dshi_3422 overlap by 4 nucleotidesDshi_3422 and Dshi_3423 overlap by 1 nucleotidesDshi_3423 and Dshi_3424 overlap by 1 nucleotidesDshi_3424 and Dshi_3425 are separated by 509 nucleotides Dshi_3415: Dshi_3415 - putative metalloendopeptidase, glycoprotease family (RefSeq), at 3,593,049 to 3,594,119 _3415 Dshi_3416: Dshi_3416 - Uroporphyrinogen III synthase HEM4 (RefSeq), at 3,594,171 to 3,594,887 _3416 Dshi_3417: Dshi_3417 - hypothetical protein (RefSeq), at 3,594,961 to 3,596,388 _3417 Dshi_3418: Dshi_3418 - HemY domain protein (RefSeq), at 3,596,399 to 3,597,907 _3418 Dshi_3419: Dshi_3419 - Amidase (RefSeq), at 3,597,982 to 3,599,307 _3419 Dshi_3420: Dshi_3420 - Glycerol kinase (EC 2.7.1.30) (from data), at 3,599,365 to 3,600,924 _3420 Dshi_3421: Dshi_3421 - peptidase S8 and S53 subtilisin kexin sedolisin (RefSeq), at 3,601,513 to 3,603,003 _3421 Dshi_3422: Dshi_3422 - hypothetical protein (RefSeq), at 3,603,000 to 3,603,596 _3422 Dshi_3423: Dshi_3423 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 3,603,596 to 3,604,171 _3423 Dshi_3424: Dshi_3424 - hypothetical protein (RefSeq), at 3,604,171 to 3,605,991 _3424 Dshi_3425: Dshi_3425 - hypothetical protein (RefSeq), at 3,606,501 to 3,606,842 _3425
Locus Name Description Strand Phenotype
Dshi_3415 Dshi_3415 putative metalloendopeptidase, glycoprotease family (RefSeq) - no data
Dshi_3416 Dshi_3416 Uroporphyrinogen III synthase HEM4 (RefSeq) + no data
Dshi_3417 Dshi_3417 hypothetical protein (RefSeq) + strong
Dshi_3418 Dshi_3418 HemY domain protein (RefSeq) + sig.
Dshi_3419 Dshi_3419 Amidase (RefSeq) - insig.
Dshi_3420 Dshi_3420 Glycerol kinase (EC 2.7.1.30) (from data) + strong
Dshi_3421 Dshi_3421 peptidase S8 and S53 subtilisin kexin sedolisin (RefSeq) - insig.
Dshi_3422 Dshi_3422 hypothetical protein (RefSeq) - sig.
Dshi_3423 Dshi_3423 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) - insig.
Dshi_3424 Dshi_3424 hypothetical protein (RefSeq) - insig.
Dshi_3425 Dshi_3425 hypothetical protein (RefSeq) - insig.

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