Gene info for Dshi_3121 in Dinoroseobacter shibae DFL-12

Updated annotation (from data): Tricarboxylate transport membrane protein TctA
Rationale: specific phenotype on citrate and cofit with other nearby components; SEED_correct
Original annotation: protein of unknown function DUF112 transmembrane (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 57145, - strand, nucleotides 3,288,269 to 3,289,786
See nucleotide sequence around Dshi_3121 or for all of scaffold 57145

Other databases: MicrobesOnline, NCBI, IMG: 2501025007, uniprot: A8LLA5

Nearby Genes

500 ntDshi_3116 and Dshi_3117 overlap by 4 nucleotidesDshi_3117 and Dshi_3118 overlap by 4 nucleotidesDshi_3118 and Dshi_3119 are separated by 18 nucleotidesDshi_3119 and Dshi_3120 overlap by 4 nucleotidesDshi_3120 and Dshi_3121 overlap by 11 nucleotidesDshi_3121 and Dshi_3122 are separated by 3 nucleotidesDshi_3122 and Dshi_3123 are separated by 80 nucleotidesDshi_3123 and Dshi_3124 are separated by 101 nucleotidesDshi_3124 and Dshi_3125 overlap by 4 nucleotidesDshi_3125 and Dshi_3126 overlap by 31 nucleotides Dshi_3116: Dshi_3116 - von Willebrand factor type A (RefSeq), at 3,282,574 to 3,283,560 _3116 Dshi_3117: Dshi_3117 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,283,557 to 3,285,068 _3117 Dshi_3118: Dshi_3118 - hypothetical protein (RefSeq), at 3,285,065 to 3,286,309 _3118 Dshi_3119: Dshi_3119 - citrate synthase (RefSeq), at 3,286,328 to 3,287,092 _3119 Dshi_3120: Dshi_3120 - L-carnitine dehydratase/bile acid-inducible protein F (RefSeq), at 3,287,089 to 3,288,279 _3120 Dshi_3121: Dshi_3121 - Tricarboxylate transport membrane protein TctA (from data), at 3,288,269 to 3,289,786 _3121 Dshi_3122: Dshi_3122 - Tricarboxylate transport protein TctB (from data), at 3,289,790 to 3,290,278 _3122 Dshi_3123: Dshi_3123 - Tricarboxylate transport protein TctC (from data), at 3,290,359 to 3,291,339 _3123 Dshi_3124: Dshi_3124 - two component transcriptional regulator, winged helix family (RefSeq), at 3,291,441 to 3,292,106 _3124 Dshi_3125: Dshi_3125 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 3,292,103 to 3,293,476 _3125 Dshi_3126: Dshi_3126 - putative iron(III) transport system substrate-binding protein (RefSeq), at 3,293,446 to 3,294,447 _3126
Locus Name Description Strand Phenotype
Dshi_3116 Dshi_3116 von Willebrand factor type A (RefSeq) + insig.
Dshi_3117 Dshi_3117 Tetratricopeptide TPR_2 repeat protein (RefSeq) + insig.
Dshi_3118 Dshi_3118 hypothetical protein (RefSeq) + sig.
Dshi_3119 Dshi_3119 citrate synthase (RefSeq) - insig.
Dshi_3120 Dshi_3120 L-carnitine dehydratase/bile acid-inducible protein F (RefSeq) - insig.
Dshi_3121 Dshi_3121 Tricarboxylate transport membrane protein TctA (from data) - strong
Dshi_3122 Dshi_3122 Tricarboxylate transport protein TctB (from data) - strong
Dshi_3123 Dshi_3123 Tricarboxylate transport protein TctC (from data) - strong
Dshi_3124 Dshi_3124 two component transcriptional regulator, winged helix family (RefSeq) + strong
Dshi_3125 Dshi_3125 integral membrane sensor signal transduction histidine kinase (RefSeq) + strong
Dshi_3126 Dshi_3126 putative iron(III) transport system substrate-binding protein (RefSeq) + strong

Or browse nearby genes

Or see the comparative fitness browser