Gene info for Dshi_2587 in Dinoroseobacter shibae DFL-12

Updated annotation (from data): DNA damage response exonuclease, associated with a ligase
Rationale: Conserved and specific phenotype: important for resisting cisplatin. In a conserved operon with a DNA ligase
Original annotation: exonuclease of the beta-lactamase fold involved in RNA processing-like protein (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 57145, + strand, nucleotides 2,752,527 to 2,753,555
See nucleotide sequence around Dshi_2587 or for all of scaffold 57145

Other databases: MicrobesOnline, NCBI, IMG: 2501024471, uniprot: A8LHY6

Nearby Genes

500 ntDshi_2582 and Dshi_2583 are separated by 123 nucleotidesDshi_2583 and Dshi_2584 are separated by 324 nucleotidesDshi_2584 and Dshi_2585 are separated by 43 nucleotidesDshi_2585 and Dshi_2586 are separated by 18 nucleotidesDshi_2586 and Dshi_2587 are separated by 289 nucleotidesDshi_2587 and Dshi_2588 overlap by 4 nucleotidesDshi_2588 and Dshi_2589 overlap by 4 nucleotidesDshi_2589 and Dshi_2590 are separated by 222 nucleotidesDshi_2590 and Dshi_2591 are separated by 116 nucleotidesDshi_2591 and Dshi_2592 are separated by 38 nucleotides Dshi_2582: Dshi_2582 - LAO/AO transport system ATPase (RefSeq), at 2,748,739 to 2,749,815 _2582 Dshi_2583: Dshi_2583 - ribosomal protein L28 (RefSeq), at 2,749,939 to 2,750,226 _2583 Dshi_2584: Dshi_2584 - hypothetical protein (RefSeq), at 2,750,551 to 2,750,907 _2584 Dshi_2585: Dshi_2585 - protein of unknown function DUF461 (RefSeq), at 2,750,951 to 2,751,463 _2585 Dshi_2586: Dshi_2586 - HpcH/HpaI aldolase (RefSeq), at 2,751,482 to 2,752,237 _2586 Dshi_2587: Dshi_2587 - DNA damage response exonuclease, associated with a ligase (from data), at 2,752,527 to 2,753,555 _2587 Dshi_2588: Dshi_2588 - Alpha/beta hydrolase fold-3 domain protein (RefSeq), at 2,753,552 to 2,754,448 _2588 Dshi_2589: Dshi_2589 - ATP dependent DNA ligase (RefSeq), at 2,754,445 to 2,756,049 _2589 Dshi_2590: Dshi_2590 - integrase family protein (RefSeq), at 2,756,272 to 2,756,904 _2590 Dshi_2591: Dshi_2591 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 2,757,021 to 2,757,491 _2591 Dshi_2592: Dshi_2592 - cobalamin synthesis protein P47K (RefSeq), at 2,757,530 to 2,758,741 _2592
Locus Name Description Strand Phenotype
Dshi_2582 Dshi_2582 LAO/AO transport system ATPase (RefSeq) + strong
Dshi_2583 Dshi_2583 ribosomal protein L28 (RefSeq) + no data
Dshi_2584 Dshi_2584 hypothetical protein (RefSeq) + no data
Dshi_2585 Dshi_2585 protein of unknown function DUF461 (RefSeq) + insig.
Dshi_2586 Dshi_2586 HpcH/HpaI aldolase (RefSeq) - insig.
Dshi_2587 Dshi_2587 DNA damage response exonuclease, associated with a ligase (from data) + strong
Dshi_2588 Dshi_2588 Alpha/beta hydrolase fold-3 domain protein (RefSeq) + strong
Dshi_2589 Dshi_2589 ATP dependent DNA ligase (RefSeq) + strong
Dshi_2590 Dshi_2590 integrase family protein (RefSeq) + insig.
Dshi_2591 Dshi_2591 transcriptional regulator, BadM/Rrf2 family (RefSeq) - strong
Dshi_2592 Dshi_2592 cobalamin synthesis protein P47K (RefSeq) + insig.

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